Table 2.
Strain or plasmid | Relevant genotype/propertyb | Source or reference |
---|---|---|
Strains | ||
TY05 | K-12 MG1655 fadD::Ptrc-BTE fadE::Ptrc-BTE fadAB::Ptrc-BTE | 34 |
TY06 | K-12 MG1655 fadD::Ptrc-BTE-H204A fadE::Ptrc-BTE-H204A fadAB::Ptrc-BTE-H204A | 34 |
TY05ara | K-12 MG1655 fadD::Ptrc-BTE fadE::Ptrc-BTE fadAB::Ptrc-BTE ΔaraFGH Φ(ΔaraEp PCP18-araE) ΔaraBAD | This work |
BW25113 | lacIq rrnB3 F− Δ(araD-araB)567 ΔlacZ4787(::rrnB-3) λ− rph-1 Δ(rhaD-rhaB)568 hsdR514 | 36 |
JW5249-1 | BW25113 ΔmarA752::kan | 36 |
JW4359-1 | BW25113 Δrob721::kan | 36 |
JW4023-5 | BW25113 ΔsoxS756::kan | 36 |
JW5503-1 | BW25113 ΔtolC732::kan | 36 |
JW2341-1 | BW25113 ΔfadL752::kan | 36 |
JW1819-1 | BW25113 Δprc755::kan | 36 |
JW2454-1 | BW25113 ΔacrD790::kan | 36 |
JW1040-1 | BW25113 ΔmdtG723::kan | 36 |
JW1655-1 | BW25113 ΔmdtK740::kan | 36 |
JW0826-1 | BW25113 Δcmr742::kan | 36 |
JW0912-1 | BW25113 ΔompF746::kan | 36 |
DY330 | K-12 W3110 ΔlacU169 gal490 pglΔ8 λ cI857 Δ(cro-bioA) (Tetr) | 39 |
Plasmids | ||
pBAD33 | PBAD promoter, pACYC origin, Cmr | 44 |
pBAD33* | pBAD33 with araC-C280* mutation | 45 |
pBAD33*-acrAB | pBAD33* carrying acrAB under PBAD control | This work |
pBAD33*-mdtEF | pBAD33* carrying mdtEF under PBAD control | This work |
pBAD33*-mdtEF-tolC | pBAD33* carrying mdtEF-tolC artificial operon under PBAD control | This work |
pBAD33*-emrAB | pBAD33* carrying emrAB under PBAD control | This work |
pBAD33*-mdtABCD | pBAD33* carrying mdtABCD under PBAD control | This work |
pKD13 | Template plasmid, R6K gamma origin, Ampr Kanr | 38 |
pCP20 | Carries yeast FLP recombinase under constitutive promoter control, pSC101 origin, λ cI857+, λ pR Rep(Ts), Ampr Cmr | 41 |
For the full strain and plasmid list, see Table S2 in the supplemental material.
Abbreviations: Tetr, tetracycline resistance; Ampr, ampicillin resistance; Cmr, chloramphenicol resistance; Kanr, kanamycin resistance; Ts, temperature sensitive.