Table 3.
Reconstruction of singleton TF regulons
| Family and regulon | No. of sites |
|||
|---|---|---|---|---|
| Sites identified with PWM and symmetry profilea | Good sites | Additional sites in genome | Total | |
| Crp/Fnr | ||||
| DVU3111 | 4 | 2 | 1 | 3 |
| Dde_1200 | 5 | 1 | 0 | 1 |
| Ddes_0528 | 1 | 1 | 1 | 2 |
| Ddes_1411 | 5 | 3 | 3 | 6 |
| Ddes_1827 | 1b | 1b | 0 | 1 |
| Ddes_2092 | 1 | 1 | 0 | 1 |
| Desal_0411 | 1 | 1 | 0 | 1 |
| Desal_0494 | 1 | 1 | 1 | 2 |
| DESPIG_03026 | 2 | 2 | 0 | 2 |
| ArsR | ||||
| DvMF_2392 | 0 | 0 | 2b | 2 |
| Ddes_1264 | 4 | 2 | 0 | 2 |
| Ddes_1925 | 0 | 0 | 2b | 2 |
| DESPIG_02495 | 2 | 1 | 2 | 3 |
| DMR_39480 | 2 | 1 | 1 | 2 |
| Dbac_0377 | 2 | 1 | 0 | 1 |
| Dbac_1936 | 6 | 1 | 0 | 1 |
| GntR | ||||
| Dbac_0812 | 1b | 1 | 1 | 2 |
| Dbac_2821 | 2 | 2 | 1 | 3 |
| Dde_3327 | 1b | 1 | 0 | 1 |
| Ddes_1162 | 2 | 1 | 0 | 1 |
| Desal_0038 | 1 | 1 | 0 | 1 |
a
Identified at the 1st step.
b
Sites identified using additional criteria.