Table 4.

Characterization of sequencing gaps^a

Sequencing gap	Genomic location (nt)b		Gap size (bp)c		Edited genomic sequence (nt)d		Associated JMRV repeat
	3A1	12E2	3A1	12E2	3A1	12E2
1	20493	20493	45	45	20493–20537	20493–20537	Repeat 1
2	23721	23721	170	196	23721–23890	23721–23916	rDL-B 1
3	24093	24119	ND	ND	NA	NA	rDL-B 2
4	26910	26936	35	35	26911–26945	26937–26971
5	54754	54780	181	190	54755–54935	54781–54970
6	82834	82860	110	110	82835–82944	82861–82970
7	110918	110944	30	30	110919–110948	110945–110974
8	112670	112696	ND	ND	NA	NA	rDL-E 1 and 2
9	127842	127868	92	92	127843–127934	127869–127960	rDL-F

^aND, not determined; NA, not applicable.

^bThat is, the first missing nucleotide in the gap.

^cThat is, the determined size of the missing sequence based on PCR analysis.

^dThat is, the location of the sequence confirmed by PCR and manually edited.