Table 2.

Genotyping of SNPs most significantly associated with PCOS in the Chinese GWAS

Chr	Gene	Chinese GWAS SNP	Chinese associated allele	Chinese GWAS OR	SNP genotyped in Cohort A	SNP genotyped in Cohort B
2p13.6	LHCGR	rs13405728	G	0.71	rs13405728	rs6732721 (r²=0.87)
2p21	THADA	rs12468394	A	0.72	rs12468394	rs12468394
2p21	THADA	rs13429458	C	0.67	rs13429458	rs13429458
2p21	THADA	rs12478601	T	0.72	rs6544661 (r²=1)	rs6544661 (r²=1)
2p21	THADA	rs11891936	A	0.66	rs11891936	rs11891936
9q33.3	DENND1A	rs2479106	G	1.34	rs2479106	rs2479106
9q33.3	DENND1A	rs10818854	A	1.51	rs10818854	rs12337273 (r²=0.83)
9q33.3	DENND1A	rs10986105	C	1.47	rs10818854 (r²=0.83)	rs12337273 (r²=1)