Table 3.
Distribution of the genotyped SNPs in contigs
| Number of SNPs/contig |
Number of SNPs in: |
||||
|---|---|---|---|---|---|
| Validation Panel | Successfully genotyped | Monomorphic | Heterozygous | True | |
| 1 |
151 |
133 |
34 |
13 |
86 |
| 2 |
154 |
126 |
39 |
21 |
66 |
| 3 |
141 |
115 |
34 |
24 |
57 |
| 4 |
98 |
79 |
30 |
20 |
29 |
| 5 |
91 |
69 |
25 |
20 |
24 |
| 6 |
81 |
72 |
24 |
30 |
18 |
| 7 |
70 |
53 |
29 |
14 |
10 |
| 8 |
48 |
39 |
18 |
11 |
10 |
| 9 |
45 |
40 |
19 |
12 |
9 |
| 10 |
38 |
29 |
7 |
12 |
10 |
| > 10 |
235 |
203 |
87 |
85 |
31 |
| Total | 1152 | 958 | 346 | 262 | 350 |
The number of SNPs identified within each contig type were summarized for the validation panel and for successfully genotyped, monomorphic, heterozygous and for true SNPs.