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Observed occurrence of the different SNP types (transitions and transversions)
| Type | Validation panel | polymorphic SNPs | Syn. SNPs | Non Syn. SNPs | |
|---|---|---|---|---|---|
| Transition (Ts) |
AG |
325 |
88 |
71 |
11 |
| CT |
529 |
184 |
169 |
4 |
|
| Transversion (Tv) |
AC |
98 |
28 |
22 |
5 |
| AT |
49 |
14 |
8 |
3 |
|
| CG |
58 |
16 |
12 |
3 |
|
| GT |
93 |
20 |
17 |
2 |
|
| TOTAL |
|
1152 |
350 |
299 |
28 |
| % ratio Ts/Tv | 2.87 | 3.48 | 4.07 | 1.15 |
