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. 2012 Oct 13;12(1):65–86. doi: 10.1074/mcp.M112.021840

Table I. For each metal condition, protein quantification was database independent. Only proteins identified in all three databases were compared under each condition.

Micronutrient status Number of significant changesa Total number of proteins comparedb Percentage of significant changes Average % changec
Metal μm in medium Au10.2 vs. FM3.1

Cu 0 24 839 2.9 16
2 20 782 2.6 17
Zn 0 31 692 4.5 16
2.5 15 625 2.4 15
Fe 0.25 14 434 3.2 14
1 17 534 3.2 14
20 21 553 3.8 14
Mn 0 2 418 0.5 14
0.05 8 404 2.0 14
2 6 408 1.5 16
Au10.2 vs. FM4

Cu 0 12 833 1.4 12
2 14 791 1.8 13
Zn 0 21 692 3.0 15
2.5 7 625 1.1 14
Fe 0.25 8 434 1.8 14
1 11 534 2.1 13
20 31 553 5.6 18
Mn 0 4 418 0.96 16
0.05 11 404 2.72 15
2 4 408 0.98 15
FM3.1 vs. FM4

Cu 0 14 839 1.7 15
2 14 796 1.8 16
Zn 0 24 692 3.5 17
2.5 15 625 2.4 16
Fe 0.25 10 434 2.3 16
1 22 534 4.1 16
20 29 553 5.2 19
Mn 0 5 418 1.2 18
0.05 10 404 2.5 17
2 7 408 1.7 19

a Significance determined by Student's t-test with a 95% confidence interval.

b Proteins were selected for comparison only if identified using all three databases.

c Calculated as (Average abundanceDatabase1 − Average abundanceDatabase2)/(Average abundanceall values).