Table 3. Probe Sets Differentially Expressed at p-value Cut-offs or p-value and Fold-Change Cut-offs.
| A Data Sets on U133_Plus_2 | |||||||||||||
| Sample Set | Differentially Expressed Sequencesa | ||||||||||||
| p≤0.05 | p≤0.05 and Fold-change≥2 | ||||||||||||
| Up | Down | Total | Up | Down | Total | ||||||||
| Asterand | 8,128 | (0.148) | 8,161 | (0.149) | 16,289 | (0.298) | 1,453 | (0.027) | 1,651 | (0.030) | 3,104 | (0.057) | |
| NCT00867100 | 9,565 | (0.175) | 11,066 | (0.202) | 20,631 | (0.377) | 1,862 | (0.034) | 1,952 | (0.036) | 3,814 | (0.070) | |
| Zaba (Amgen)b | 8,296 | (0.152) | 9,136 | (0.167) | 17,432 | (0.319) | 1,556 | (0.028) | 1,478 | (0.027) | 3,034 | (0.056) | |
| Gudjonsson High | 9,264 | (0.169) | 10,660 | (0.195) | 19,924 | (0.364) | 1,363 | (0.025) | 786 | (0.014) | 2,149 | (0.039) | |
| Gudjonsson Low | 9,666 | (0.177) | 11,624 | (0.212) | 21,290 | (0.389) | 1,290 | (0.024) | 678 | (0.012) | 1,968 | (0.036) | |
| Yao | 9,567 | (0.175) | 11,827 | (0.216) | 21,394 | (0.391) | 1,681 | (0.031) | 1,648 | (0.030) | 3,329 | (0.061) | |
| B All Data Sets with Content Restricted to U133_A | |||||||||||||
| Sample Set | Differentially Expressed Sequences a | ||||||||||||
| p≤0.05 | p≤0.05 and Fold-change≥2 | ||||||||||||
| Up | Down | Total | Up | Down | Total | ||||||||
| Asterand | 4,299 | (0.194) | 3,478 | (0.157) | 7,777 | (0.350) | 1,453 | (0.065) | 1,651 | (0.074) | 3,104 | (0.140) | |
| NCT00867100 | 5,247 | (0.236) | 4,382 | (0.197) | 9,629 | (0.433) | 1,862 | (0.084) | 1,952 | (0.088) | 3,814 | (0.172) | |
| Zaba (Amgen) | 4,328 | (0.195) | 3,937 | (0.177) | 8,265 | (0.372) | 1,556 | (0.070) | 1,478 | (0.067) | 3,034 | (0.137) | |
| Zaba (GSE11903) | 4,241 | (0.191) | 4,604 | (0.207) | 8,845 | (0.398) | 736 | (0.033) | 724 | (0.033) | 1,460 | (0.066) | |
| Gudjonsson High | 5,480 | (0.247) | 4,410 | (0.199) | 9,890 | (0.445) | 1,363 | (0.061) | 786 | (0.035) | 2,149 | (0.097) | |
| Gudjonsson Low | 5,666 | (0.255) | 5,090 | (0.229) | 10,756 | (0.484) | 1,405 | (0.063) | 783 | (0.035) | 2,188 | (0.098) | |
| Yao | 5,291 | (0.238) | 5,046 | (0.227) | 10,337 | (0.465) | 1,681 | (0.076) | 1,648 | (0.074) | 3,329 | (0.150) | |
| Reischl | 4,285 | (0.193) | 4,947 | (0.223) | 9,232 | (0.416) | 639 | (0.029) | 697 | (0.031) | 1,336 | (0.060) | |
a
# probe sets (%).
b
Baseline samples only.