Table 1. Comparison of genomic composition.
ActE | S. coelicolor | S. griseus | C. thermocellum | C. japonicus | |
---|---|---|---|---|---|
Genome size (nt) | 7414440 | 8667507 | 8545929 | 3843301 | 4576573 |
Proteome size | 6357 | 8153 | 7136 | 3173 | 3750 |
Total CAZy Proteins | 167 | 221 | 132 | 103 | 183 |
% CAZy Proteinsa | 2.6% | 2.7% | 1.8% | 3.2% | 4.9% |
Total GHb | 119 | 154 | 80 | 70 | 124 |
Total PLc | 6 | 11 | 4 | 6 | 14 |
Total CEd | 29 | 36 | 23 | 20 | 28 |
Total CBMe | 85 | 98 | 68 | 121 | 134 |
antiSMASH clustersf | 22 | 24 | 37 | 3 | 4 |
Genes in clusters | 620 | 718 | 1139 | 89 | 111 |
% antiSMASH | 9.8% | 8.8% | 16.0% | 2.8% | 3.0% |
aProteins classified as Carbohydrate Active Enzymes (CAZy).
bGH, glycoside hydrolase.
cPL, pectate lyase.
dCE, carbohydrate esterase.
eCBM, carbohydrate binding module.
fPutative antibiotic producing gene cluster.