Table 2 . QTL affecting seed area.

Position	Associated Marker	Additive Effect, mm2	Variance Explained, %	LOD
RIL1
1@0.0	PVV4	0.0043	4.6	4.1
1@19.6	GD.86L	0.0067	13.9	11.2
1@74.0	c1.loc74	0.0052	8.6	7.3
3@4.0	c3.loc4	−0.0041	7.4	6.4
3@63.0	c3.loc63	0.0036	4.5	4.0
4@64.0	c4.loc64	0.0060	12.2	10.0
5@36.0	c5.loc36	−0.0039	7.6	6.5
5@98.0	c5.loc98	0.0046	7.9	6.8
1@19.6:3@4.0	GD.86L: c3.loc4	0.0043	5.3	4.7
5@36.0:5@98.0	c5.loc36: c5.loc98	0.0020	1.5	1.4
RIL2
1@0.0	PVV4	0.0054	8.5	7.6
1@20.0	c1.loc20	0.0048	6.5	5.8
1@73.0	c1.loc73	0.0033	3.9	3.6
2@42.7	Erecta	0.0043	7.0	6.3
3@1.0	c3.loc1	−0.0055	10.1	8.7
3@31.0	AD.92L	0.0033	3.6	3.4
4@40.6	DF.108L-Col	0.0041	6.3	5.7
4@67.8	GB.750C	0.0034	3.9	3.6
5@96.0	c5.loc96	0.0060	12.9	10.9
NIL
1@11.2	m6	0.0077	21.0	9.1
1@72.2	c1.loc72	0.0051	8.4	4.1
2@37.3	m42	0.0051	11.8	5.6
3@2.9	c3.loc3	−0.0059	20.3	8.8
1@11.2: 1@72.2	m6: c1.loc72	0.0026	2.1	1.1

The genomic position, associated marker or pseudomarker, estimated additive effect of substitution of a Cvi allele at the indicated locus, and percentage of explained variance for each QTL present in the selected model with the highest LOD score. For RIL1, (T_f, T_fv1, T_i, T_a, T_av1) = (5.51, 4.12, 3.40, 4.36, 2.63) and (T_m, T_i^H, T_i^L) = (2.57, 3.40, 1.55). For RIL2, (T_f, T_fv1, T_i, T_a, T_av1) = (5.50, 4.12, 3.42, 4.34, 2.58) and (T_m, T_i^H, T_i^L) = (2.60, 3.42, 1.52). For NIL, (T_f, T_fv1, T_i, T_a, T_av1) = (5.04, 3.51, 2.59, 4.55, 2.57) and (T_m, T_i^H, T_i^L) = (2.74, 2.49, 0.76).