Table 3 . QTL affecting seed length (major axis).

Position	Associated Marker	Additive Effect, mm	Variance Explained, %	LOD
RIL1
1@19.6	GD.86L	0.011	15.3	10.6
1@76.0	c1.loc76	0.018	15.5	10.7
2@39.0	c2.loc39	0.012	8.1	6.0
4@66.0	c4.loc66	0.018	19.2	12.9
5@45.5	HH.480C	−0.0066	10.4	7.5
5@98.0	c5.loc98	0.011	6.5	4.9
1@19.6: 5@45.5	GD.86L: HH.480C	−0.011	6.6	5.0
RIL2
1@0.0	PVV4	0.011	8.1	8.0
1@21.0	c1.loc21	0.013	10.5	10.0
1@76.3	GD.160C	0.0082	5.3	5.4
2@42.0	c2.loc42	0.016	21.3	17.9
3@8.3	CH.322C	−0.011	8.6	8.4
4@38.0	c4.loc38	0.0084	5.5	5.6
4@65.0	c4.loc65	0.013	11.8	11.0
5@96.0	c5.loc96	0.0099	8.3	8.1
1@21.0: 3@8.3	c1.loc21: CH.322C	0.0094	5.2	5.3
2@42.0: 5@96.0	c2.loc42: c5.loc96	0.0047	1.6	1.7
NIL
1@11.3	c1.loc11	0.015	16.2	11.6
1@72.2	c1.loc72	0.014	17.8	12.4
2@38.5	c2.loc39	0.019	20.8	13.9
3@0.0	m53	−0.015	14.9	10.9
4@0.0	m69	−0.015	10.4	8.2
4@58.5	c4.loc59	0.023	10.4	8.2
5@95.2	c5.loc95	0.0095	4.6	4.0
4@0.0: 4@58.5	m69: c4.loc59	0.012	3.6	3.2

The genomic position, associated marker or pseudomarker, estimated additive effect of substitution of a Cvi allele at this locus, and percentage of explained variance for each QTL present in the selected model with the highest LOD score. For RIL1, (T_f, T_fv1, T_i, T_a, T_av1) = (5.51, 4.12, 3.45, 4.33, 2.55) and (T_m, T_i^H, T_i^L) = (2.59, 3.45, 1.53). For RIL2, (T_f, T_fv1, T_i, T_a, T_av1) = (5.49, 4.09, 3.41, 4.34, 2.57) and (T_m, T_i^H, T_i^L) = (2.58, 3.41, 1.51). For NIL, (T_f, T_fv1, T_i, T_a, T_av1) = (4.65, 3.10, 2.16, 4.23, 2.20) and (T_m, T_i^H, T_i^L) = (2.56, 2.16, 0.54).