Table 2.
Assembly parameters
| N reads BT | N reads AT | %reads discarded | Avg.L AT | NRMC | N contigs | N bases(Mb) | Avg. L Contigs | SD | Maximum Contig Length(bp) | N50 | Avg.L | SD | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Petrosia ficiformis |
49,758,556 |
32,612,454* |
34.5 |
65.4 |
28,439,277 |
67,423 |
29.9 |
443.3 |
370.7 |
7,377 |
503 |
926.8 |
496.6 |
|
Crella elegans |
26,513,534 |
25,951,906* |
2.1 |
93.1 |
16,464,495 |
71,524 |
26.7 |
372.7 |
261.7 |
4,637 |
437 |
682.1 |
333.1 |
|
Cephalothrix hongkoiensis |
51,091,244 |
26,631,980* |
47.9 |
79.8 |
14,447,555 |
76,507 |
28.8 |
376.7 |
242.7 |
5,198 |
390 |
652.8 |
300.1 |
|
Cerebratulus marginatus |
51,711,276 |
46,967,592* |
9.2 |
73.8 |
22,977,409 |
109,947 |
57.1 |
518.0 |
394.2 |
7,731 |
559 |
991.0 |
521.6 |
|
Chiton olivaceus |
46,265,184 |
40,889,060* |
11.6 |
98.5 |
32,085,523 |
207,559 |
75.9 |
366.0 |
238.6 |
9,374 |
372 |
627.0 |
305.3 |
|
Octopus vulgaris |
16,431,468 |
15,422,631* |
6.1 |
125.0 |
11,670,780 |
77,383 |
41.7 |
540.0 |
125.0 |
16,472 |
599 |
1122.9 |
660.5 |
|
Sipunculus nudus |
45,973,825 |
43,842,184** |
4.6 |
100.5 |
25,679,520 |
71,960 |
31.2 |
431.7 |
228.0 |
3,032 |
437 |
676.2 |
262.5 |
|
Hormogaster samnitica |
50,789,952 |
47,857,894** |
5.8 |
96.5 |
32,511,666 |
190,189 |
75.9 |
399.8 |
312.5 |
7,319 |
423 |
766.6 |
426.8 |
|
Metasiro americanus |
24,943,641 |
23,959,711** |
3.9 |
129.6 |
19,735,275 |
101,929 |
43.9 |
439.5 |
423.0 |
10,407 |
477 |
1,010.3 |
621.7 |
| Alipes grandidieri | 32,294,430 | 31,561,359** | 2.3 | 134.8 | 25,457,734 | 162,326 | 59.9 | 380.9 | 306.9 | 9,323 | 377 | 710.7 | 443.4 |
Grey background indicates libraries sequenced for 150 bp; otherwise they are 100 bp. Abbreviations: N, number; BT, before thinning and trimming; AT, after thinning and trimming; NMRC, number of reads matched to contigs; Mb, megabases; bp, base pairs; avg., average; L, length; SD, standard deviation; *, thinning limit of 0.05; **, thinning limit of 0.005.