Skip to main content
. 2012 Nov 29;9:33. doi: 10.1186/1742-9994-9-33

Table 5.

Protein names and lengths (in aminoacids, aa) for the five most redundant hits in each transcriptome

# Hits Protein name and[species name] Putative transposable element Protein length(aa) Accession number
Petrosia ficiformis
 
 
 
 
x9
PREDICTED: hypothetical protein LOC100641198 [Amphimedon queenslandica]
-
673
XP_003382742
x9
PREDICTED: hypothetical protein LOC100639583 [Amphimedon queenslandica]
yes
1768
XP_003390293
x10
PREDICTED: RING finger protein 213-like [Amphimedon queenslandica]
-
5361
XP_003389786
x12
ankyrin 2,3/unc44 [Aedes aegypti]
-
789
XP_001649474
x16
PREDICTED: hypothetical protein LOC100637079 [Amphimedon queenslandica]
-
41943
XP_003386025
Crella elegans
 
 
 
 
x25
Collagen protein [Suberites domuncula]
-
282
CAC81019
x36
aggregation factor protein 3, form C [Microciona prolifera]
-
2205
AAC33162
x38
PREDICTED: deleted in malignant brain tumors 1 protein-like [Amphimedon queenslandica]
-
3131
XP_003389240
x46
PREDICTED: hypothetical protein LOC100640736 [Amphimedon queenslandica]
-
5715
XP_003383871
x193
PREDICTED: hypothetical protein LOC100637079 [Amphimedon queenslandica]
-
41943
XP_003386025
Cephalothrix hongkongiensis
 
 
 
 
x14
pol-like protein [Ciona intestinalis]
yes
1235
BAC82623
x14
pol-like protein [Ciona intestinalis]
yes
1263
BAC82626
x15
PREDICTED: similar to ORF2-encoded protein, partial [Hydra magnipapillata]
yes
372
XP_002155414
x15
PREDICTED: Pao retrotransposon peptidase family protein-like [Saccoglossus kowalevskii]
-
1559
XP_002731015
x23
putative zinc finger protein [Schistosoma mansoni]
-
486
CCD80531
Cerebratulus marginatus
 
 
 
 
x9
PREDICTED: hypothetical protein LOC497165 [Danio rerio]
yes
2265
XP_003200870
x11
ORF2-encoded protein [Danio rerio]
yes
1027
BAE46429
x11
PREDICTED: similar to ORF2-encoded protein, partial [Strongylocentrotus purpuratus]
yes
1117
XP_001187755
x11
PREDICTED: similar to ORF2-encoded protein [Strongylocentrotus purpuratus]
yes
1124
XP_001189850
x11
PREDICTED: hypothetical protein LOC100535924 [Danio rerio]
-
1448
XP_003199942
Octopus vulgaris
 
 
 
 
x38
PREDICTED: hypothetical protein LOC100609033 [Pan troglodytes]
yes
255
XP_003317434
x44
PREDICTED: hypothetical protein LOC100597269 [Nomascus leucogenys]
yes
220
XP_003276349
x57
PREDICTED: hypothetical protein LOC100414382, partial [Callithrix jacchus]
yes
178
XP_002762361
x57
PREDICTED: zinc finger protein 91-like [Acyrthosiphon pisum]
-
818
XP_003243211
x90
PREDICTED: hypothetical protein LOC100608502, partial [Pan troglodytes]
yes
211
XP_003315526
Chiton olivaceus
 
 
 
 
x16
predicted protein [Nematostella vectensis]
yes
1079
XP_001630327
x17
PREDICTED: similar to tyrosine recombinase [Strongylocentrotus purpuratus]
-
461
XP_001183896
x22
pol-like protein [Biomphalaria glabrata]
yes
1222
ABN58714
x29
hypothetical protein EAI_13357 [Harpegnathos saltator]
-
172
EFN88744
x48
PREDICTED: similar to ORF2-encoded protein, partial [Hydra magnipapillata]
yes
372
XP_002155414
Sipunculus nudus
 
 
 
 
x7
dopamine beta hydroxylase-like protein, partial [Pomatoceros lamarckii]
-
504
ADB11406
x7
pol-like protein [Ciona intestinalis]
yes
1263
BAC82626
x7
PREDICTED: similar to transposase [Strongylocentrotus purpuratus]
yes
1312
XP_001193486
x9
pol-like protein [Ciona intestinalis]
yes
1235
BAC82623
x11
lectin 1B [Arenicola marina]
-
243
ADO22714
Hormogaster samnitica
 
 
 
 
x15
leechCAM [Hirudo medicinalis]
-
858
AAC47655
x15
pannexin 4 [Aplysia californica]
-
413
NP_001191576
x16
predicted protein [Nematostella vectensis]
-
2047
XP_001624963
x19
hypothetical protein CBG_27119 [Caenorhabditis briggsae AF16]
-
224
CAR99373
x24
tractin [Hirudo medicinalis]
-
1880
AAC47654
Metasiro americanus
 
 
 
 
x14
transglutaminase [Limulus polyphemus]
-
764
2012342A
x15
putative reverse transcriptase [Takifugu rubripes]
yes
851
AAK58879
x30
hypothetical protein BRAFLDRAFT_210900 [Branchiostoma floridae]
-
489
XP_002611360
x39
hypothetical protein BRAFLDRAFT_79800 [Branchiostoma floridae]
-
512
XP_002597956
x53
hypothetical protein BRAFLDRAFT_89523 [Branchiostoma floridae]
-
396
XP_002590717
Alipes grandidieri
 
 
 
 
x55
PREDICTED: similar to predicted protein [Hydra magnipapillata]
yes
1371
XP_002161911
x56
Transposable element Tcb1 transposase [Salmo salar]
yes
281
ACN11475
x57
hypothetical protein TcasGA2_TC002110 [Tribolium castaneum]
yes
346
EEZ99596
x58
hypothetical protein EAG_05969 [Camponotus floridanus]
yes
282
EFN71217
x123 hypothetical protein TcasGA2_TC000717 [Tribolium castaneum] yes 346 EEZ98274

Their putative transposable element nature is indicated, as well as the Genbank accession number for each protein.