Table 6.
Individual searches for our transcriptome datasets (no background color) and the JGI genomes of a sponge (pink), a mollusk (violet), and an annelid (green)
|
Notch |
|
|
|
|
||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Notch | Delta | Jagged/ Serrate | Fringe | HES | SuH | Deltex | |||||
Petrosia ficiformis |
578 |
247 |
680 |
346 |
234 |
510 |
157 |
|
|
|
|
Crella elegans |
472 |
247 |
247 |
307 |
85 |
300 |
147 |
|
|
|
|
Amphimedon queenslandica |
1667/614 |
539 |
1320 |
413/370/279 |
290 |
656 |
454 |
|
|
|
|
Cephalotrix hogkongiensis |
272/173/103 |
139 |
- |
137 |
343/309/110 |
205 |
168/89 |
|
|
|
|
Cerebratulus marginatus |
286/495 |
101 |
131 |
140 |
358/109/167 |
271 |
233 |
|
|
|
|
Chiton olivaceus |
498 |
358 |
- |
123 |
289/174/96 |
168 |
65 |
|
|
|
|
Octopus vulgaris |
916 |
217 |
- |
- |
324/247 |
445 |
101 |
|
|
|
|
Lottia gigantea |
2404 |
724 |
1245 |
350 |
231 |
549 |
230 |
|
|
|
|
Sipunculus nudus |
451/232/241 |
- |
- |
- |
- |
- |
- |
|
|
|
|
Hormogaster samnitica |
464/546/684/456 |
521/268/260/388/314/170 |
- |
200/197 |
350/314/238/173/133/108 |
521/482 |
171/952 |
|
|
|
|
Capitella teleta |
2580/2612/2673/2985 |
785 |
1204 |
207 |
307/199/141 |
459/445 |
610 |
|
|
|
|
Metasiro americanus |
600 |
780 |
552 |
340 |
58/179/ 344 |
493 |
- |
|
|
|
|
Alipes grandidieri |
196/203 |
151 |
115/416 |
66/82 |
80/294 |
273 |
415 |
|
|
|
|
|
TGF-β |
|
|
|
|
|
|
|
|
|
|
|
TGF-β1 |
Activin |
Smad 1 |
Smad 2 |
Smad 3 |
dpp |
BMP1 |
BMP3 |
BMP5 |
BMP6 |
|
Petrosia ficiformis |
435 |
- |
230 |
- |
186 |
- |
184 |
- |
- |
102 |
|
Crella elegans |
90 |
- |
408 |
98 |
190 |
- |
150 |
- |
- |
140 |
|
Amphimedon queenslandica |
371 |
- |
408/412/181 |
- |
- |
- |
1035 |
- |
- |
413 |
|
Cephalotrix hogkongiensis |
251 |
118 |
151 |
- |
307 |
- |
208 |
- |
114 |
- |
|
Cerebratulus marginatus |
413 |
120 |
473 |
- |
266 |
- |
172 |
- |
114 |
- |
|
Chiton olivaceus |
109 |
285 |
77 |
- |
242 |
181 |
110 |
- |
152 |
|
|
Octopus vulgaris |
- |
500 |
302 |
- |
- |
97 |
107 |
308 |
- |
679 |
|
Lottia gigantea |
516 |
523/576 |
466 |
428 |
- |
406 |
332 |
381 |
104 |
- |
|
Sipunculus nudus |
- |
59 |
- |
- |
- |
- |
153 |
- |
- |
- |
|
Hormogaster samnitica |
446/317 |
192 |
472 |
- |
417 |
104 |
226 |
96 |
- |
- |
|
Capitella teleta |
511 |
471/429 |
309 |
|
452 |
339 |
1 |
239 |
- |
- |
|
Metasiro americanus |
362/374 |
407/71 |
- |
287 |
- |
351 |
340/613 |
117 |
411 |
160 |
|
Alipes grandidieri |
425/507 |
- |
117 |
- |
94 |
173 |
113 |
480 |
- |
- |
|
|
Hedgehog |
Housekeeping genes |
|||||||||
|
Hedgehog/ Hedgling |
Patched |
Smoothened/ Frizzled |
Ci/Gli |
TPI |
ATPB |
MAT |
PFK |
FBA |
EF-1α |
CAT |
Petrosia ficiformis |
1212 |
- |
288/252/133 |
343 |
165 |
180 |
94 |
239 |
231 |
253 |
383/422 |
Crella elegans |
327 |
- |
165/156 |
517 |
218 |
267 |
377/162 |
139 |
172/128 |
460 |
374 |
Amphimedon queenslandica |
1184 |
- |
300/289/275 |
143 |
228 |
184 |
439/385 |
840 |
359 |
249 |
508/498 |
Cephalotrix hogkongiensis |
- |
- |
199 |
- |
141 |
264 |
- |
698 |
- |
191/79 |
152 |
Cerebratulus marginatus |
- |
- |
100 |
|
248 |
393 |
100 |
705 |
38 |
331 |
255 |
Chiton olivaceus |
303 |
- |
465 |
105 |
235 |
499 |
247 |
421 |
121 |
- |
190 |
Octopus vulgaris |
- |
145 |
590/305/221 |
- |
79 |
509 |
332 |
815 |
60 |
109 |
335 |
Lottia gigantea |
355 |
527 |
879/572/489 |
1493 |
252 |
521 |
410 |
770 |
273 |
469 |
510 |
Sipunculus nudus |
91 |
- |
- |
- |
222 |
325 |
247 |
- |
243/113 |
333 |
509 |
Hormogaster samnitica |
386/301/127 |
555/536/107 |
838 |
695 |
150 |
178 |
402/106 |
585 |
213 |
230/133 |
458 |
Capitella teleta |
329 |
1465 |
589/597/591 |
235 |
240 |
479 |
393 |
826 |
364 |
463 |
534 |
Metasiro americanus |
236 |
670 |
75/577 |
597 |
236 |
210 |
261/182 |
766 |
213 |
207 |
101 |
Alipes grandidieri | 285 | 132 | 66 | 681 | 235 | 289 | 107/78 | 525 | 202 | 124 | 431 |
Length of protein sequences are given in amino acids. Abbreviations: JAG/SER, jagged and serrate; HES, hairy enhancer of split; Su(H), suppressor of hairless; Dx, deltex; TGF-β1, transforming growth factor β; ACV, activin; Smad, mothers against decapentaplegic; dpp, decapentaplegic; BMP, bone morphogenetic protein. Asterisks indicate the presence of hedgling instead of hedgehog; SMO/FZD, smoothened and frizzled; Ci/Gli, cubitus interruptus/GLI; TPI, triosephosphate isomerase; ATPB, ATP synthase subunit b vesicular; MAT, methionine adenosyl transferase; PFK, phosphofructokinase; FBA, fructose biphosphate aldolase; EF-1α, elongation factor-1α; CAT, catalase.