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. 2012 Nov 29;9:33. doi: 10.1186/1742-9994-9-33

Table 6.

Individual searches for our transcriptome datasets (no background color) and the JGI genomes of a sponge (pink), a mollusk (violet), and an annelid (green)

 
Notch
 
 
 
 
  Notch Delta Jagged/ Serrate Fringe HES SuH Deltex        
Petrosia ficiformis
578
247
680
346
234
510
157
 
 
 
 
Crella elegans
472
247
247
307
85
300
147
 
 
 
 
Amphimedon queenslandica
1667/614
539
1320
413/370/279
290
656
454
 
 
 
 
Cephalotrix hogkongiensis
272/173/103
139
-
137
343/309/110
205
168/89
 
 
 
 
Cerebratulus marginatus
286/495
101
131
140
358/109/167
271
233
 
 
 
 
Chiton olivaceus
498
358
-
123
289/174/96
168
65
 
 
 
 
Octopus vulgaris
916
217
-
-
324/247
445
101
 
 
 
 
Lottia gigantea
2404
724
1245
350
231
549
230
 
 
 
 
Sipunculus nudus
451/232/241
-
-
-
-
-
-
 
 
 
 
Hormogaster samnitica
464/546/684/456
521/268/260/388/314/170
-
200/197
350/314/238/173/133/108
521/482
171/952
 
 
 
 
Capitella teleta
2580/2612/2673/2985
785
1204
207
307/199/141
459/445
610
 
 
 
 
Metasiro americanus
600
780
552
340
58/179/ 344
493
-
 
 
 
 
Alipes grandidieri
196/203
151
115/416
66/82
80/294
273
415
 
 
 
 
 
TGF-β
 
 
 
 
 
 
 
 
 
 
 
TGF-β1
Activin
Smad 1
Smad 2
Smad 3
dpp
BMP1
BMP3
BMP5
BMP6
 
Petrosia ficiformis
435
-
230
-
186
-
184
-
-
102
 
Crella elegans
90
-
408
98
190
-
150
-
-
140
 
Amphimedon queenslandica
371
-
408/412/181
-
-
-
1035
-
-
413
 
Cephalotrix hogkongiensis
251
118
151
-
307
-
208
-
114
-
 
Cerebratulus marginatus
413
120
473
-
266
-
172
-
114
-
 
Chiton olivaceus
109
285
77
-
242
181
110
-
152
 
 
Octopus vulgaris
-
500
302
-
-
97
107
308
-
679
 
Lottia gigantea
516
523/576
466
428
-
406
332
381
104
-
 
Sipunculus nudus
-
59
-
-
-
-
153
-
-
-
 
Hormogaster samnitica
446/317
192
472
-
417
104
226
96
-
-
 
Capitella teleta
511
471/429
309
 
452
339
1
239
-
-
 
Metasiro americanus
362/374
407/71
-
287
-
351
340/613
117
411
160
 
Alipes grandidieri
425/507
-
117
-
94
173
113
480
-
-
 
 
Hedgehog
Housekeeping genes
 
Hedgehog/ Hedgling
Patched
Smoothened/ Frizzled
Ci/Gli
TPI
ATPB
MAT
PFK
FBA
EF-1α
CAT
Petrosia ficiformis
1212
-
288/252/133
343
165
180
94
239
231
253
383/422
Crella elegans
327
-
165/156
517
218
267
377/162
139
172/128
460
374
Amphimedon queenslandica
1184
-
300/289/275
143
228
184
439/385
840
359
249
508/498
Cephalotrix hogkongiensis
-
-
199
-
141
264
-
698
-
191/79
152
Cerebratulus marginatus
-
-
100
 
248
393
100
705
38
331
255
Chiton olivaceus
303
-
465
105
235
499
247
421
121
-
190
Octopus vulgaris
-
145
590/305/221
-
79
509
332
815
60
109
335
Lottia gigantea
355
527
879/572/489
1493
252
521
410
770
273
469
510
Sipunculus nudus
91
-
-
-
222
325
247
-
243/113
333
509
Hormogaster samnitica
386/301/127
555/536/107
838
695
150
178
402/106
585
213
230/133
458
Capitella teleta
329
1465
589/597/591
235
240
479
393
826
364
463
534
Metasiro americanus
236
670
75/577
597
236
210
261/182
766
213
207
101
Alipes grandidieri 285 132 66 681 235 289 107/78 525 202 124 431

Length of protein sequences are given in amino acids. Abbreviations: JAG/SER, jagged and serrate; HES, hairy enhancer of split; Su(H), suppressor of hairless; Dx, deltex; TGF-β1, transforming growth factor β; ACV, activin; Smad, mothers against decapentaplegic; dpp, decapentaplegic; BMP, bone morphogenetic protein. Asterisks indicate the presence of hedgling instead of hedgehog; SMO/FZD, smoothened and frizzled; Ci/Gli, cubitus interruptus/GLI; TPI, triosephosphate isomerase; ATPB, ATP synthase subunit b vesicular; MAT, methionine adenosyl transferase; PFK, phosphofructokinase; FBA, fructose biphosphate aldolase; EF-1α, elongation factor-1α; CAT, catalase.

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