Table 3.
Pair-wise LD coefficients (r2, up-right and D′, bottom-left) between GLCE SNPs in the 1990–1995 Turkish cohort
r2/D′ | rs11072067 | rs16952868 | rs11631403 | rs1553251 | rs7176782 | rs11629932 | rs17360351 | rs3865014 | rs6545 |
---|---|---|---|---|---|---|---|---|---|
rs11072067 | 0.28 | 0.81 | 0.70 | 0.16 | 0.21 | 0.30 | 0.61 | 0.17 | |
rs16952868 | 0.85 | 0.72 | 0.43 | 0.72 | 0.29 | 0.12 | 0.27 | 0.72 | |
rs11631403 | 0.90 | 1.00 | 0.86 | 0.32 | 0.30 | 0.25 | 0.56 | 0.30 | |
rs1553251 | 1.00 | 0.89 | 0.93 | 0.23 | 0.30 | 0.31 | 0.70 | 0.21 | |
rs7176782 | 0.62 | 0.89 | 0.74 | 0.62 | 0.81 | 0.13 | 0.30 | 0.83 | |
rs11629932 | 0.53 | 0.92 | 0.62 | 0.66 | 0.80 | 0.14 | 0.48 | 0.85 | |
rs17360351 | 0.82 | 0.84 | 0.89 | 1.00 | 0.84 | 0.92 | 0.45 | 0.18 | |
rs3865014 | 0.78 | 0.85 | 0.90 | 1.00 | 0.85 | 0.85 | 1.00 | 0.41 | |
rs6545 | 0.56 | 1.00 | 0.64 | 0.53 | 1.00 | 0.95 | 0.87 | 0.88 |
Selected SNPs (Tagger algorithm in Haploview, r2 > 0.8) are shown in bold.