Table 5.
Genome Sequence Analysis of the Yunnan 0902 Strain of Japanese Encephalitis Virus
| |
Size |
Nucleotide substitution |
Amino acid substitution |
||||
|---|---|---|---|---|---|---|---|
| Genome segment | Nucleotides | Amino acids | No. of substitutions | % substitutions | No. of substitutions | % substitutions | % NSRAAC |
| 5′-NCR | 95 | 0 | 1 | 1.05 | 0 | 0.0 | 0.0 |
| Capsid | 381 | 127 | 2 | 0.52 | 0 | 0.0 | 0.0 |
| Membrane | 501 | 167 | 3 | 0.59 | 1 | 0.60 | 33.3 |
| Envelope | 1500 | 500 | 10 | 0. 67 | 9 | 1.80 | 90.0 |
| NS1 | 1245 | 415 | 6 | 0.48 | 5 | 1.20 | 83.3 |
| NS2A | 492 | 164 | 2 | 0.41 | 1 | 0.61 | 50.0 |
| NS2B | 393 | 131 | 3 | 0.76 | 2 | 1.52 | 66.7 |
| NS3 | 1857 | 619 | 7 | 0.38 | 4 | 0.65 | 57.1 |
| NS4A | 801 | 267 | 2 | 0.25 | 1 | 0.37 | 50.0 |
| NS4B | 411 | 137 | 7 | 1.70 | 5 | 3.65 | 71.4 |
| NS5 | 2735 | 911 | 25 | 0.91 | 18 | 1.98 | 72.0 |
| 3′-NCR | 565 | 0 | 0 | 0 | 0 | 0.0 | 0.0 |
| Complete | 10976 | 3432 | 68 | 0.62 | 46 | 1.34 | 67.6 |
The nucleotide sequence of the Yunnan 0902 genome was compared with that of the SA14-14-2 strain.
NCR, non-coding region; NS, non-structural; NSRAAC, nucleotide substitution resulting in an amino acid change.