Table 3.

Performance evaluation for Alzheimer’s disease

Selection	Rank	Recall	Precision	F-score
Baseline: Genes / Proteins	60	0.10	0.92	0.17
	230	0.30	0.73	0.42
	469	0.50	0.61	0.55
Maximal F-score	728	0.67	0.52	0.59
Baseline + Clinical Management	61	0.10	0.90	0.17
	226	0.30	0.75	0.42
	465	0.50	0.61	0.55
Maximal F-score	682	0.65	0.54	0.59
Baseline + Evidence Marker	62	0.10	0.89	0.17
	225	0.30	0.75	0.42
	464	0.50	0.61	0.55
Maximal F-score	654	0.62	0.54	0.57
Baseline +Prognosis	63	0.10	0.87	0.17
	247	0.30	0.68	0.41
	541	0.50	0.52	0.51
Maximal F-score	740	0.61	0.47	0.53
Baseline + Diagnostics	64	0.10	0.86	0.17
	237	0.30	0.71	0.42
	494	0.50	0.57	0.53
Maximal F-score	520	0.52	0.57	0.54
Baseline + Statistics	64	0.10	0.86	0.17
	227	0.30	0.74	0.42
	678	0.50	0.42	0.45
Maximal F-score	377	0.41	0.62	0.49
Baseline + Clinical Management + Evidence Marker	60	0.10	0.92	0.17
	224	0.30	0.75	0.42
	451	0.50	0.63	0.56
Maximal F-score	555	0.57	0.59	0.58
Baseline + Clinical Management + Evidence Marker + Prognosis	61	0.10	0.90	0.17
	230	0.30	0.73	0.42
	568	0.50	0.50	0.50
Maximal F-score	479	0.47	0.56	0.51

Genes were ranked based on frequency and evaluated against the Alzheimer’s gold standard. For the different selections recall, precision, F-score and rank has been estimated for 10, 30, and 50% recall. In addition the maximal recall has been estimated.