Table 3.

Overrepresented GO categories in lists of genes with overlapping eQTLs in both GG2 and GG1 with opposite additive effect.

GO category	Genes in GO cat	Genes matched in GO cat	Adjusted p-value	Term	Ont
GO:0004364	48	At1g27140 At1g59670 At1g59700 At1g65820	0.002533	Glutathione transferase activity	MF
GO:0016829	331	At4g37870 At2g20340 At3g54920 At3g56060 At4g27070 At4g23600 At2g20610	0.036424	Lyase activity	MF
GO:0006066	229	At5g35790 At3g56060 At4g37870 At1g17890 At4g12110 At1g20330	0.024179	Alcohol metabolic process	BP
GO:0010948	11	At1g20330 At3g18524	0.033681	Negative regulation of cell cycle process	BP

Categories are significantly enriched with an adjusted p-value < 0.05. The ontology type can be Biological Process (BP) or Molecular Function (MF).