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. 2013 Jan 31;64(2):625–635. doi: 10.1093/jxb/ers357

Table 1.

Description of the 12 SSR markers used to assess the genome integrity of S. bulbocastanum and S. commersonii synthetic tetraploids and the diploid parents (cmm1t and blb1C) they were derived from. For each marker, the respective name, source, repeat motifs, forward (Fw) and reverse (Rv) primer sequences, annealing temperature (T a), map location, and amplified allele sizes are reported.

Name Repeat motif Primer sequences T a (C°) Map location Allele size (nt)a
STG0001 (CT)n Fw_CAGCCAACATTTGTACCCCT 55 XI C: 126, 158
Rv_ACCCCCACTTGCCATATTTT B: 130, 138
STI004 (AAG)n Fw_GCTGCTAAACACTCAAGCAGAA 57 VI C: 66, 72
Rv_CAACTACAAGATTCCATCCACAG B: 78, 81
STI0012 (ATT)n Fw_GAAGCGACTTCCAAAATCAGA 53 IV C: 179, 188
Rv_AAAGGGAGGAATAGAAACCAAAA B: 167
STI0030 (ATT)n Fw_TGACCCTCCAACTATAGATTCTTC 56 XII C: 133
Rv_TGACAACTTTAAAGCATATGTCAGC B: 79
STI0032 (GGA)n Fw_TGGGAAGAATCCTGAAATGG 54 V C: 118
Rv_TGCTCTACCAATTAACGGCA B: 115, 118
STM0031 (AC)n…(AC)n GCAC (AC)n (GCAC)n Fw_CATACGCACGCACGTACAC 52 VII C: 63
Rv_TTCAACCTATCATTTTGTGAGTCG B: ND
STM1052 (AT)n GT (AT)n (GT)n Fw_CAATTTCGTTTTTTCATGTGACAC 54 IX C: ND
Rv_ATGGCGTAATTTGATTTAATACGTAA B: 207, 224
STM1053 (TA)n (ATC)n Fw_TCTCCCCATCTTAATGTTTC 55 III C: 120, 172
Rv_CAACACAGCATACAGATCATC B: 120, 172
STM1104 (TCT)n Fw_TGATTCTCTTGCCTACTGTAATCG 57 VIII C: 195
Rv_CAAAGTGGTGTGAAGCTGTGA B: 165, 177
STM1106 (ATT)n Fw_TCCAGCTGATTGGTTAGGTTG 56 X C: 174
Rv_ATGCGAATCTACTCGTCATGG B: 141, 150
STM5114 (ACC)n Fw_AATGGCTCTCTCTGTATGCT 53 II C: 289
Rv_GCTGTCCCAACTATCTTTGA B: 286
STM5127 (TCT)n Fw_TTCAAGAATAGGCAAAACCA 55 I C: 246
Rv_CTTTTTCTGACTGAGTTGCCTC B: 243

a C, S. commersonii; B, S. bulbocastanum; ND, not detected.