Table 1.
Hormone-regulated genes commonly induced in all root tissues. Shown are the log2 fold-change values (log2FC) for genes commonly induced (>2.0) by cytokinin and auxin among root tip (RT), lateral root (LR), and whole root (WR) with adjusted P-values ≤0.05 in one or more tissue.
| GeneID | Description | RT | LR | WR | |||
|---|---|---|---|---|---|---|---|
| log2FC | P adj | log2FC | P adj | log2FC | P adj | ||
| Induced by cytokinin | |||||||
| Solyc01g088160 | SlCKX2 | 2.58 | 0.046321 | 3.14 | 0.00771 | 3.32 | 0.003426 |
| Solyc04g080820 | SlCKX4 | 2.90 | 8.56E-06 | 3.04 | 2.12E-06 | 2.18 | 0.000725 |
| Solyc12g008900 | SlCKX6 | 5.39 | 0.027127 | 7.31 | 0.00434 | 7.32 | 0.002308 |
| Solyc02g071220 | SlRRA2 | 2.31 | 3.48E-05 | 3.18 | 7.98E-09 | 3.03 | 2.01E-08 |
| Solyc06g048930 | SlRRA6 | 2.53 | 0.117332 | 2.90 | 0.05133 | 3.85 | 0.007115 |
| Solyc06g048600 | SlRRA7 | 2.55 | 0.000164 | 2.88 | 2.00E-05 | 3.17 | 2.25E-06 |
| Solyc09g092470 | TPS14 | 6.22 | 2.07E-26 | 5.21 | 1.26E-22 | 3.85 | 2.75E-14 |
| Solyc01g105960 | (E)-beta-ocimene synthase | 4.42 | 9.02E-14 | 3.61 | 2.66E-11 | 3.08 | 3.86E-09 |
| Solyc02g080790 | SlDHS | 3.45 | 0.000293 | 6.05 | 4.94E-10 | 5.69 | 2.61E-09 |
| Solyc06g076760 | Laccase 1a | 3.75 | 8.39E-07 | 2.27 | 0.002648 | 2.63 | 0.000348 |
| Solyc06g073580 | 1-aminocyclopropane-1-carboxylate oxidase 1 | 2.68 | 0.016622 | 2.81 | 0.014623 | 2.47 | 0.022694 |
| Solyc12g008740 | 1-aminocyclopropane- 1-carboxylate synthase | 3.02 | 8.96E-12 | 4.26 | 1.15E-14 | 3.21 | 1.38E-08 |
| Solyc04g010330 | Auxin-regulated protein | 2.18 | 0.351047 | 2.73 | 0.163185 | 3.78 | 0.02978 |
| Solyc02g080120 | Gibberellin 2-beta- dioxygenase 7 | 3.06 | 6.76E-05 | 3.16 | 5.34E-06 | 2.37 | 0.000459 |
| Solyc01g059950 | GAI-like protein 1 | 4.87 | 2.53E-27 | 3.50 | 2.87E-14 | 2.37 | 1.25E-08 |
| Solyc06g082770 | LOB domain family protein | 2.60 | 1.16E-06 | 3.34 | 4.00E-18 | 2.45 | 7.70E-10 |
| Solyc12g100150 | LOB domain protein 4 | 4.34 | 1.24E-05 | 4.84 | 2.39E-07 | 5.99 | 5.71E-09 |
| Induced by auxin | |||||||
| Solyc01g107400 | Indole-3-acetic acid (IAA)-amido synthetase | 3.15 | 1.24E-06 | 2.20 | 0.001216 | 2.11 | 0.003209 |
| Solyc02g064830 | SlGH3–3 | 7.31 | 8.65E-107 | 6.61 | 4.49E-98 | 8.22 | 1.03E-108 |
| Solyc02g092820 | SlGH3–4 | 6.56 | 1.56E-55 | 6.76 | 2.66E-57 | 7.16 | 3.70E-59 |
| Solyc07g063850 | SlGH3–9 | 4.95 | 7.98E-34 | 4.93 | 7.20E-33 | 4.51 | 2.70E-28 |
| Solyc06g084070 | SlIAA2 | 2.57 | 3.34E-11 | 3.64 | 7.49E-20 | 3.31 | 9.31E-16 |
| Solyc12g096980 | SlIAA5 | 3.99 | 3.01E-45 | 3.53 | 1.50E-38 | 3.45 | 1.85E-36 |
| Solyc06g008590 | SlIAA10 | 3.78 | 7.08E-05 | 3.64 | 0.000265 | 2.99 | 0.004369 |
| Solyc03g120380 | SlIAA11 | 4.91 | 1.47E-32 | 5.69 | 8.86E-37 | 5.60 | 3.68E-29 |
| Solyc07g008020 | SlIAA19 | 7.58 | 1.41E-50 | 6.92 | 7.03E-46 | 7.17 | 2.95E-41 |
| Solyc08g021820 | SlIAA21 | 5.47 | 9.70E-09 | 5.06 | 2.01E-07 | 4.26 | 1.09E-05 |
| Solyc09g083280 | SlIAA23 | 2.22 | 2.62E-25 | 2.50 | 7.22E-31 | 2.45 | 6.08E-29 |
| Solyc01g010970 | SlAGO7 | 2.35 | 1.05E-16 | 2.24 | 5.98E-15 | 2.02 | 1.23E-12 |
| Solyc12g096110 | Protein BREVIS RADIX | 4.19 | 9.56E-33 | 3.67 | 1.42E-29 | 3.52 | 1.92E-20 |
| Solyc07g048000 | Phototropic-responsive NPH3 | 3.29 | 4.54E-15 | 2.97 | 2.15E-11 | 2.27 | 6.34E-07 |
| Solyc03g044090 | Phototropic-responsive NPH3 family protein | 2.44 | 1.70E-10 | 2.74 | 3.04E-12 | 2.43 | 1.67E-09 |
| Solyc04g072300 | Ethylene-responsive transcription factor 4 | 3.49 | 5.57E-05 | 4.52 | 9.39E-07 | 3.72 | 0.000107 |
| Solyc05g050830 | Ethylene-responsive transcription factor 4 | 5.99 | 3.07E-09 | 6.17 | 4.36E-09 | 4.82 | 3.81E-06 |
| Solyc03g007460 | SlCRF4 | 2.63 | 5.25E-21 | 2.70 | 1.31E-22 | 2.36 | 1.04E-15 |
| Solyc01g079260 | WRKY transcription factor 4 | 2.22 | 3.11E-23 | 2.07 | 5.77E-20 | 2.21 | 2.02E-21 |
| Solyc11g017100 | GRAS family transcription factor | 3.27 | 0.000112 | 3.54 | 5.35E-05 | 2.12 | 0.026739 |