Table 4.

List of default color plugins

Name	Description
Atom Index Color	Color based on atom ID (from atom 1, 2, etc.)
Charge Color	Color based on predicted electrostatic partial charge
Custom Color	Color all atoms a specific, custom color
Distance Color	Color based on distance from one end of the
	molecule
Element Color	Standard color scheme, giving each atom a color
(Default)	defined by its element
Residue Color	Color based on amino acid or nucleic acid residue
	(i.e., glycine, histidine, etc.)
SMARTS Color	Color atoms matching a specific SMARTS pattern
	with a custom color