Table 6.
Sequences of C/D box snoRNA genes in E. histolytica
| Me-Eh-SSU-G1296 |
TGTAATGATGAGATTTTACCATGCACCACTCAGAATTATCTACCCAAAGATAAGTTGTGTTGATTATGGTGTCTGAAC |
| Me-Eh-SSU-U1024 |
CACTGTGATGAAGCTTTTTATCCAATCCTCTGAATATCGTTGATATTTATCTATGTGGATATTAATGTTGACTTCTGAGT |
| Me-Eh-SSU-A83 |
GAAGATGATGACTAGACTTGGCAGTCTCCCTGTTCGCAGTTTCATACTGAATAAATATGAGGATAAAGGGTTCTGATT |
| Me-Eh-SSU-G41 |
AGAAATGATGACTTGTGTGCTTAATCTTTGTTGATTCAAAAATGATAACACTTCTTTAAAGTCTGATT |
| Me-Eh-SSU-A431 |
GCAAATGAGGAAATAAAATTTGGGTAATTTACGTCTGAAATTGATGATAACCATCTGTCGTTCTGATG |
| Me-Eh-SSU-U871 |
AACGATCATGAATTTTCACCTCTCCCGTTTTTTTCTGAATCACCCCAATTATTCCTTTTAATCCTTCTCTCGAAATGATT |
| Me-Eh-SSU-G1535 |
TCGAGTGACGATAAACCACAGACCTGTTCTGACCTTAATGGAGATAACAGAGCTGGCTCCAATTAGCGCTGGGGCTCTGACG |
| Me-Eh-SSU-A27 |
GTCAGTGATGATCAATAAATCAGCATATATCTGAATAAAGTATGATGGTTTAAGACGGGTCTGAGA |
| Me-Eh-SSU-A1830 |
CAATATGATGAAAAAGCACCAACTCACCTCTTTAGATGATATTCCTGATTTTGATTTTGATGAAATGATTAACCAAACTGAGG |
| Me-Eh-SSU-A836 |
CTTTTTGATGAATAAACTCTTTTAATCTTTCTTTTGAATTTTCTTTTCTCTTTTTCTTTCTTTTGAATTTTCTTCTAACTTTTCTTTTAGAGGCTTGCTGAGG |
| Me-Eh-SSU-G1152 |
GGTAATGATGATAGAAAGTTTTCAGATTATTAATGAAGACATTTTCAGCCTTGTCTGAGC |
| Me-Eh-SSU-G628 |
TAAAATGATGATTATAGTTTTAATACAACATTGATTTAAATGAAACACACAACTTTCACTAATTTTAATAATCTAATTTTTACAATTAACTCTGACT |
| Me-Eh-SSU-A1183 |
AAAAATGATGAAAAAAGAAAAAAGTCCTGGAGTTCCAACCAGGATGAATATCCATGATGATAAACTAATCTTCTCACTGATT |
| Me-Eh-SSU-A790 |
AGAAGTGATGATATATAAATTCCATGTTAGAACTGATATAACGTGTTGATATTTGTATAAGTCTGATC |
| Me-Eh-SSU-C1805 |
GTAGATGATGACTTATACGTCGGGCGGACTGAAAGATTATATGTAGATTCGACGTGTCTGATA |
| Me-Eh-LSU-A928a |
ACCAATGATGATTTACATTAAACCATCTTTCGTCTGAAAAACTGATGTCAAATATGTCATAATCTGAGG |
| Me-Eh-LSU-A928b |
TAAGATGATGATTTGATTCCGTGTTTCGTCTGAATCCTGGTGAAAACTCGACAATCTTATCTGATT |
| Me-Eh-LSU-U1868 |
TTCTATGATGATATTTAATGAAAGAAGAAAAGAGTATGAACTTAACTCAAAAAAATATAACGGTGGTGCTTTACCTAAAATCTCTTTTTTTCGTCCTGAAT |
| Me-Eh-LSU-U3580a |
GAATATGATGAAGTATTTTAATAAGAAATATAATAAATAATAATAGAAAGAATGAAATAAGATAATATGAAAGAATAAGAAAAATAAAAAGATATAACTGATG |
| Me-Eh-LSU-U3580b |
GAATATGATGAATTAATTTAATAAGAAATATAATAAATAATAAAAGAAAGAATGAAATAAGATAATATGAAATAATAAGAAAATAAAATGATATAAATGATGATA |
| Me-Eh-LSU-A785 |
AGAAATGATGATAATGTGGTCCGTGTTTCTGAATACTGAAGAGACTATAACCACTTCTGATT |
| Me-Eh-LSU-G2958 |
AGCAATGAAGATATACGCAGTTATCCCTGTCCGAGAACTGCAAATGTGGATATGTTAACTAAGTCTGAGC |
| Me-Eh-LSU-A3089 |
AGAAATGATGAAATAATACTCAGCTCACTCTGAATATAAATGAAGAATGAGTTTCTATATGATTTCTGATT |
| Me-Eh-LSU-C2414 |
GTCTGTGAGGAATTGAAAGATAGGGACATCTGATATAACTGATGTTAAAAATCTTTGATTTGACTGAGA |
| Me-Eh-LSU-G926 |
TGAAGTGATGATCCTTTATTTAAGTGATTAACCATGATAATCATCTTTCGGGTCTGATT |
| Me-Eh-LSU-U1018 |
GAATATGATGAACTTAATCAATATTCAAATAGCTGAATAATATGATAAAATGAAAGTCTGTTACTGAAA |
| Me-Eh-LSU-G1028 |
TATGATGATGAAATGAGTCTCCGAATAATATTGAGGACAAATCTTTCGCTCCTATCTGATT |
| Me-Eh-LSU-U1176a |
TATAATGATGTATATTTTCTTCATTAACAATTTCTTTGTTTATTTATTGAATTTAGTTGATAATTCATTATTAACACTACAACAACGTTTTGAATATCTTTTACTGAAG |
| Me-Eh-LSU-U1176b |
TATTATGATGTATATTTTATTCATTAACAATTTCTTTGTTTATTTATTGAATTTAGTTGATAATTCATTATTAACACTACAACAATGGTTTGAATATCTTTTACTGAAG |
| Me-Eh-LSU-U1176c |
TATAATGATGTATATTTTCATCATTAACAATTTCTTTGTTTATTTATTGAATTTAGTTGATAATTCATTATTAACACTACAACAACGTTTTGAATATCTTTTACTGAAG |
| Me-Eh-LSU-A2333 |
TGTAATGATGAGAACTTTATGAATAATAGAGAGGATTCTTATAAAAAGAAGTGGTAATATTCTCGTTTTGAAAATGTTACCAGGGATGAATAATCTCCCTTGATGATTCTTTCATAGTTACTCTGAAC |
| Me-Eh-LSU-A228 |
ACATATGATGAATTTCTTGGAGAACTGAATTTAAATTGAAGACAATTTATATTATGTTGCAAAGAACTGATG |
| Me-Eh-5.8 S-U84 |
TATAATGATGATATAAAACAATAAATTATGACTTTTCTTCAATTTTTTGATATTCACTGAAA |
| Me-Eh-5.8 S-A92 |
TGTAGTGATGATGGAAGAATTAATTCAAATTTTAATGAATTAGTGTTATATACTGAAAGAGAGAGAATAGATGAGTATTGTGAAAGGTCTAACCTTCCTTTAAATACTACTGAAA |
| EhCDOrph1 |
CTAAATGATTTTCTAAATGATGACTCTTGTGGTGGTTTTGGAGAAGACTGATTTGATGAATAAGAAGATGACCATCCTGAAGAACATTCATTTGG |
| EhCDOrph2 |
GACTTGATAGAATTAAGTGATGACATGTGTTGAACAATCTCTGAGTTTTGATGACAACTTACCTTCGTCTGATATTTCTTTTTCTTC |
| EhCDOrph3 |
AATTAAAAAAATAACAGTGATGACTTTACTGCGTTATCTTAAGTAGGATTCTTTTATAGTTTCCAGTGATTTCAACTTTCACTTGAGTCTGAGTTATTCTTTTTATA |
| EhCDOrph4 |
TTTAATCAAATCCACAGTGATGAAATAACTTGTCTGAGAGTCATTTTTAATCATGATGGCATGTTTTTATTTCTGAGTGGGTTATTTAACT |
| EhCDOrph5 |
ATAATAAGATGTAAGAATGATGAAGTTTTTATTAAACTATGAATATTACATGATTACTTGATCCTCTGACTTACATTTAATTTT |
| EhCDOrph6 |
TTTGAATTAGAAGACGATGATGAATTTGAATTAGAAGACGACGAAGAAGAAGATGATGAATAAATCCTTAAATAACTGAGTGCTTATATTCAAA |
| EhCDOrph7 | TTTGAATTAGAAGACGATGATGAATTTGAATTAGAAGACGACGAAGAAGAAGATGATGAATAAATCCTTAAATAACTGAGTGCTTATATTCAAA |
Note: Box C and box D are depicted in bold. Box C’ and D’ represented in bold and italics. Antisense elements are in italics.