Table 7.
U3 snoRNA genes in E. histolytica
| U3 snoRNA genes | Len (nt) | Seq (%) | Scaffold | Start | End | Homology Yeast/Human | Location |
|---|---|---|---|---|---|---|---|
| A. U3 snoRNA genes | |||||||
| Eh_U3a |
209 |
91% |
DS571856 |
3136 |
3344 |
snR17a/U3 U3 |
IR |
| Eh_U3b |
225 |
92% |
DS571750 |
1819 |
1595 |
snR17a/U3 U3 |
IR |
| Eh_U3c |
221 |
91% |
DS571479 |
13861 |
14081 |
snR17a/U3 U3 |
IR |
| Eh_U3d |
221 |
91% |
DS571353 |
16563 |
16343 |
snR17a/U3 U3 |
IR |
| Eh_U3e |
225 |
91% |
DS571336 |
2559 |
2783 |
snR17a/U3 U3 |
IR |
| B. Sequence of U3 snoRNA genes | |||||||
| Eh_U3a |
TAGACCGTACTCTTAGGATCATTTCTATAGTACAGTCAATCCATTATCCGTCTTAAAAATAACAACAAGACAATAGGATGAAGACTAAATAACCAACAACACCAACGGGAGATAAACAGTTGGAAACAAATGTACAATGAACGGCTTGAAACAATCTAAAGAAAGAAATTTCTAAAGATGGTTCAAGAGGTGAATGTTAGGGTGTCTGA |
||||||
| Eh_U3b |
TAGACCGTACTCTTAGGATCATTTCTATAGTACAGTCAATCCATTATCCGTCTTAAAAATAACAACAAGACAATAGGATGAAGACTAAATAACCAACAACACCAACGGGAGATAAACAGTTGGAAACAAATGTACAATGAACGGCTTGAAACAATCTAAAGAAAGAAATTTCCAAAGAAAGTTCAAGAGGTGATGTTAGGGTGTCTGACTATCTTTTTATGAAAT |
||||||
| Eh_U3c |
TAGACCGTACTCTTAGGATCATTTCTATAGTACAGTCAATCCATTATCCGTCTTAAAAATAACAACAAGACAATAGGATGAAGACTAAATAACCGACAGCACCAACGGGAGATAAACAGTTGGAAACAAATGTACAATGAACGGCTTGAAACAATCTAAGGAAAGAAATTTCCAAAGAAGGTTCAAGAGGTGATGTTAGGGTGTCTGACTATCTTTTTATG |
||||||
| Eh_U3d |
TAGACCGTACTCTTAGGATCATTTCTATAGTACAGTCAATCCATTATCCGTCTTAAAAATAACAACAAGACAATAGGATGAAGACTAAATAACCAACAACACCAACGGGAGATAAACAGTTGGAAACAAATGTACAATGAACGGCTTGAAACAATCTAAAGAAAGAAATTTCTAAAGATGGTTCAAGAGGTGATGTTAGGGTGTCTGACTATCTTTTTATG |
||||||
| Eh_U3e | TAGACCGTACTCTTAGGATCATTTCTATAGTACAGTCAATCCATTATCCGTCTTAAAAATAACAACAAGACAATAGGATGAAGACTAAATAACCGACAGCACCAACGGGAGATAAACAGTTGGAAACAAATGTACAATGAACGGCTTGAAACAATCTAAGGAAAGAAAATTCTAAAGAAGGTTCAAGAGGTGATGTTAGGGTGTCTGACTATATTTTTACGAAAT | ||||||
Note: “Len.” denotes length of the snoRNA genes; “Seq.” is sequence identity of corresponding snoRNA genes in E. dispar and “IR”, intergenic region.