Table 1.

Number of called SNPs grouped by both genomic location class and positive relative to baits

	Category	Candidate SNPS	Called SNPs	Percent of total
Categorized by annotation of genomic region
	Promoter	152223	64534	12.8
	5′-UTR	30586	13433	2.7
	Exon	446450	240693	47.9
	3′-UTR	29481	11753	2.3
	Intron	329559	149919	29.8
	Intergenic1	154785	22329	4.4
Categorized by position relative to baits
	Within-bait	360558	241351	48.7
	Adjacent to baits	568115	225581	45.5
	Off-target	201201	28594	5.8

¹Inclues SNPs from both targeted intergenic control regions as well as off-target regions.