. 2013 Jan 10;92(1):107–113. doi: 10.1016/j.ajhg.2012.11.004

Table 2.

Whole-Genome Association Statistics and the Closest Gene to the Estimated Location of the Causal Agent for the 78 Gene-Regions that Passed Our Genome-Wide Significance Threshold 1 × 10⁻⁵ with Ŝ Locations of 150 kb or Less between the Two Data Sets

Chr	Gene region (WTCCC/NIDDK if different)
1	NFIA^b, *PGM1^a/EFCAB7^a^,^b, RORC^a/THEM4, KCNK1^a^,^b, LGALS8^a, ACTN2*^a/HEATR1
2	LOC400940, *FAM49A, DNAJC27-AS1^a/ADCY3^a, DCTN1^a/RTKN^a^,^b, intergenic (2q14.1), STK39^a, ZNF804A^a, ERBB4*^a
3	STAC/ARPP21,*ITGA9^a, EPHA6^b, COL8A1*
4	TEC^a/SLAIN2, LNX1/RPL21P44^b, *PDGFRA^b, COL25A1^a^,^b, SNX25*^a
5	*MCC^a^,^b, MEGF10/PRRC1*^b
6	*GPLD1^a, GABBR1^a, EYS*^a, FNDC1^a, T^b,
7	*MACC1/TMEM196, NPY^b, INHBA-AS1/GLI3, SEMA3C^a, TSPAN12/KCND2^a, intergenic^b(7q31.33), PODXL*^b
8	MTUS1^a, LOC100507632, STMN2^b, *intergenic (8q21.13), DCAF13/FZD6^b, intergenic*^b(8q23.3)
9	DOCK8^a^,^b
10	*GPR158^a^,^b, FAM13C^a, ARID5B/C10orf107, PLAU^b, KCNMA1^a, XPNPEP1, NRAP*^a
11	OR52N4/OR52N2^b, BDNF, *OR9G4, KIRREL3*^a
12	CCDC91^b, *TMEM117^a^,^b, C12orf74^b, ANO4*^a
13	*MIR4703*
14	PNN/GEMIN2^a^,^b, *NRXN3*^a^,^b
15	OTUD7A^a, PGBD4/CHRM5^a
16	RBFOX1^b, *RBFOX1^a, BRD7,**HSD11B2^b, IRF8*
17	GRB2^a/MIR3678
18	GATA6, *RIT2^a^,^b, IER3IP1*^b
20	HAO1^a^,^b, LOC339568, *CD40/SLC12A5*^a^,^b
22	CSF2RB^a/LOC1005006241
X	FMR1NB

bold denotes that the signal is replicated using the data stratified according to non-Jewish ileal and extraileal inflammation.

At least one of the estimated locations Ŝ is located within the identified gene.

The signal is significant in the pooled NIDDK data as well as the stratified non-Jewish ileal and extraileal data set. All locations in kb are in NCBI 37. Full details (p values and estimates of Ŝ) are given in Table S2.