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. 2012 Nov 29;4(12):1316–1323. doi: 10.1093/gbe/evs110

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© The Author(s) 2012. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Fig. 3.— — Results showing (a) the number of mean non-zero data points used to calculate the substitution density and (b) the values of substitution density in 125 bp sequence adjacent to the ILPs for the parental alignment as well as two of its partitions, A and B (Partition A contains ILPs associated with SSR indels in coding and noncoding regions, while partition B contains ILPs associated with large indels in coding and noncoding regions). Lower than 150 values for non-zero data points at >25 bp distance in (a) represents that taking an average for 1,000 random iterations, lesser than 150 ILPs are 125 bp apart from each other in all three types of comparisons.