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. 2012 Oct 26;4(12):1275–1285. doi: 10.1093/gbe/evs094

Fig. 3.—

Fig. 3.—

SNP matrix and SNP-based phylogenetic analysis. (A) SNP matrix. (B) Phylogenetic analysis based on 806 concatenated core genomic SNP nucleotides in the eight household USA300 isolates and strain HOU-MR relative to the FPR3757 USA300 reference strain. (C) Phylogenetic analysis of household isolates, geographically diverse USA300 isolates, and USA300 reference strains, based on 1,577 concatenated core genomic SNP nucleotides.