Table 1. Shannon’s diversity index and chao1 estimates for GI and respiratory microbiome samples.

	Control GI	Modulated GI	Control Upper Respiratory	Modulated Upper Respiratory	Control Lower Respiratory	Modulated Lower Respiratory
	Shannon's Diversity Index		Shannon's Diversity Index		Shannon's Diversity Index
Before Inoculation	2.319810978	2.140615909	NA	NA	NA	NA
After Inoculation	2.90892015919303*	3.14141065945317*	3.127766308	3.146193617	1.47	1.49
	Chao1 Estimate		Chao1 Estimate		Chao1 Estimate
Before Inoculation	1545	1389.6	NA	NA	NA	NA
After Inoculation	1635.6	2291.7	2541.3	2309.6	394.4	339.7