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. Author manuscript; available in PMC: 2014 Feb 1.
Published in final edited form as: Genet Epidemiol. 2012 Nov 17;37(2):163–172. doi: 10.1002/gepi.21696

Figure 5. LD patterns by different simulation methods and their reference (1000 Genomes without rare SNPs).

Figure 5

Each curve demonstrates the change of the averaged value over pairwise LD (R2) values along different marker distances for HAPGEN2 and regression-based algorithm, and their reference 1000 Genomes Phase I interim sample after removing SNPs with MAF less than 0.01 (black).