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. Author manuscript; available in PMC: 2014 Feb 1.
Published in final edited form as: Mol Oral Microbiol. 2012 Oct 12;28(1):1–17. doi: 10.1111/omi.12005

Table 5.

Differentially expressed operons between A. actinomycetemcomitans JP2 and non-JP2 genotypes

Cluster ID HK1651 Gene ID Length (bp) Product Description JP2/nonJP2 ratio
p-cluster00813 AA00401 594 slyD: FKBP-type peptidyl-prolyl cis-trans isomerase 1.721
p-cluster00710 AA00402 717 periplasmic/secreted protein 2.634a
p-cluster00965 AA00404 432 COG3076: Uncharacterized protein conserved in bacteria 3.276a
p-cluster00993 AA00406 393 mscL: large-conductance mechanosensitive channel 2.416a
p-cluster00218 AA00407 1374 trkA: trk system potassium uptake protein 3.008
p-cluster00233 AA00408 1353 sun, fmu, fmv, rsmB: SUN protein (FMU protein) 3.502a
p-cluster01270 AA00409 954 fmt: methionyl-tRNA formyltransferase 2.662
p-cluster01400 AA00410 510 def: peptide deformylase 2.656a

p-cluster00778 AA00546 633 napC: denitrification system component 0.091a
p-cluster00946 AA00547 447 napB: periplasmic nitrate reductase 0.089a
p-cluster00545 AA00549 879 napH: ferredoxin-type protein 0.06a
p-cluster06328 AA00550 678 napG: ferredoxin-type protein 0.054a
p-cluster01495 AA00552 2484 napA: periplasmic nitrate reductase precursor 0.046
p-cluster01456 AA00553 282 napD: NapD component of periplasmic nitrate reductase 0.034
p-cluster01596 AA00555 162 hypothetical protein D11S_0211 1.157

p-cluster00484 AA02563 942 tkt: transketolase C-terminal section 0.593
p-cluster01310 AA02564 531 tkt: transketolase N-terminal section 0.348a
p-cluster06816 AA02566 1092 PTS system, IIC component 0.401a
p-cluster09728 AA02568 267 sgaB: sugar phosphotransferase component II B 0.606

p-cluster00192 AA02803 1431 lktD 1.656
p-cluster00056 AA02805 2121 lktB 3.996a
p-cluster00011 AA02806 3165 lktA 2.925a
p-cluster13459 AA02807 504 lktC 6.1a

p-cluster05272 AA02828 105 Hypothetical protein 1.449
p-cluster00938 AA02829 465 pal: peptidoglycan-associated outer membrane 1.183
p-cluster00276 AA02830 1278 tolB: colicin tolerance protein 2.768a
p-cluster01209 AA02832 1206 tolA: outer membrane integrity protein N/Ab
p-cluster00978 AA02834 420 tolR: colicin transport protein 2.862a
p-cluster05329 AA02835 96 Hypothetical protein 2.11a
p-cluster00717 AA02836 687 tolQ: colicin transport protein 2.008a
p-cluster00991 AA02837 402 tol-pal system-associated acyl-CoA thioesterase 1.731a
p-cluster01904 AA02838 276 hypothetical protein APJL_0311 1.891a
p-cluster05330 AA02839 96 Hypothetical protein 1.028
p-cluster00338 AA02840 1134 cydB: cytochrome D ubiquinol oxidase, subunit II 0.762
p-cluster01161 AA02841 1563 cydA: cytochrome D ubiquinol oxidase, subunit I 0.838
a

Significantly different between JP2 and non-JP2 genotypes by t-test at P<0.05

b

No analysis was performed due to problems in probe design