Table 5.
Cluster ID | HK1651 Gene ID | Length (bp) | Product Description | JP2/nonJP2 ratio |
---|---|---|---|---|
p-cluster00813 | AA00401 | 594 | slyD: FKBP-type peptidyl-prolyl cis-trans isomerase | 1.721 |
p-cluster00710 | AA00402 | 717 | periplasmic/secreted protein | 2.634a |
p-cluster00965 | AA00404 | 432 | COG3076: Uncharacterized protein conserved in bacteria | 3.276a |
p-cluster00993 | AA00406 | 393 | mscL: large-conductance mechanosensitive channel | 2.416a |
p-cluster00218 | AA00407 | 1374 | trkA: trk system potassium uptake protein | 3.008 |
p-cluster00233 | AA00408 | 1353 | sun, fmu, fmv, rsmB: SUN protein (FMU protein) | 3.502a |
p-cluster01270 | AA00409 | 954 | fmt: methionyl-tRNA formyltransferase | 2.662 |
p-cluster01400 | AA00410 | 510 | def: peptide deformylase | 2.656a |
| ||||
p-cluster00778 | AA00546 | 633 | napC: denitrification system component | 0.091a |
p-cluster00946 | AA00547 | 447 | napB: periplasmic nitrate reductase | 0.089a |
p-cluster00545 | AA00549 | 879 | napH: ferredoxin-type protein | 0.06a |
p-cluster06328 | AA00550 | 678 | napG: ferredoxin-type protein | 0.054a |
p-cluster01495 | AA00552 | 2484 | napA: periplasmic nitrate reductase precursor | 0.046 |
p-cluster01456 | AA00553 | 282 | napD: NapD component of periplasmic nitrate reductase | 0.034 |
p-cluster01596 | AA00555 | 162 | hypothetical protein D11S_0211 | 1.157 |
| ||||
p-cluster00484 | AA02563 | 942 | tkt: transketolase C-terminal section | 0.593 |
p-cluster01310 | AA02564 | 531 | tkt: transketolase N-terminal section | 0.348a |
p-cluster06816 | AA02566 | 1092 | PTS system, IIC component | 0.401a |
p-cluster09728 | AA02568 | 267 | sgaB: sugar phosphotransferase component II B | 0.606 |
| ||||
p-cluster00192 | AA02803 | 1431 | lktD | 1.656 |
p-cluster00056 | AA02805 | 2121 | lktB | 3.996a |
p-cluster00011 | AA02806 | 3165 | lktA | 2.925a |
p-cluster13459 | AA02807 | 504 | lktC | 6.1a |
| ||||
p-cluster05272 | AA02828 | 105 | Hypothetical protein | 1.449 |
p-cluster00938 | AA02829 | 465 | pal: peptidoglycan-associated outer membrane | 1.183 |
p-cluster00276 | AA02830 | 1278 | tolB: colicin tolerance protein | 2.768a |
p-cluster01209 | AA02832 | 1206 | tolA: outer membrane integrity protein | N/Ab |
p-cluster00978 | AA02834 | 420 | tolR: colicin transport protein | 2.862a |
p-cluster05329 | AA02835 | 96 | Hypothetical protein | 2.11a |
p-cluster00717 | AA02836 | 687 | tolQ: colicin transport protein | 2.008a |
p-cluster00991 | AA02837 | 402 | tol-pal system-associated acyl-CoA thioesterase | 1.731a |
p-cluster01904 | AA02838 | 276 | hypothetical protein APJL_0311 | 1.891a |
p-cluster05330 | AA02839 | 96 | Hypothetical protein | 1.028 |
p-cluster00338 | AA02840 | 1134 | cydB: cytochrome D ubiquinol oxidase, subunit II | 0.762 |
p-cluster01161 | AA02841 | 1563 | cydA: cytochrome D ubiquinol oxidase, subunit I | 0.838 |
Significantly different between JP2 and non-JP2 genotypes by t-test at P<0.05
No analysis was performed due to problems in probe design