Table 1.
Similarity between the Arabidopsis GX synthesis proteins and their respective Arabidopsis and Physcomitrella homologs
| Arabidopsis protein | vs. gene model | ClustalW identity score(%) |
|---|---|---|
|
AtIRX10-L (At5g61840) |
AtIRX10 (At1g27440) |
86.17 |
| |
PpGT47A (Pp1s7_455V6) |
75.75 |
|
AtIRX10 (At1g27440) |
AtIRX10-L (At5g61840) |
86.17 |
| |
PpGT47A (Pp1s7_455V6) |
76.39 |
|
AtFRA8 (At2g28110) |
AtF8H (At5g22940) |
57.81 |
| |
Pp1s315_20V6.1 |
45.31 |
| |
Pp1s217_58V6.1 |
48.33 |
| |
Pp1s13_216V6.1 |
45.98 |
|
AtF8H (At5g22940) |
AtFRA8 (At2g28110) |
57.81 |
| |
Pp1s315_20V6.1 |
43.07 |
| |
Pp1s217_58V6.1 |
47.86 |
| |
Pp1s13_216V6.1 |
43.92 |
|
AtIRX9 (At2g37090) |
AtIRX9-L (At1g27600) |
29.06 |
| |
Pp1s52_108V6.1 |
29.06 |
| |
Pp1s1_540V6.1 |
27.92 |
|
AtIRX9-L (At1g27600) |
AtIRX9 (At2g37090) |
29.06 |
| |
Pp1s52_108V6.1 |
44.92 |
| |
Pp1s1_540V6.1 |
44.16 |
|
AtIRX14 (At4g36890) |
AtIRX14-L (At5g67230) |
61.79 |
| |
Pp1s248_13V6.1 |
29.33 |
| |
Pp1s19_221V6.1 |
27.74 |
| |
Pp1s78_128V6.1 |
30.46 |
|
AtIRX14-L (At5g67230) |
AtIRX14 (At4g36890) |
61.79 |
| |
Pp1s248_13V6.1 |
24.80 |
| |
Pp1s19_221V6.1 |
26.83 |
| |
Pp1s78_128V6.1 |
28.17 |
|
AtGUX1 (At3g18660) |
AtGUX2 (At4g33330) |
39.60 |
| |
Pp1s21_381V6.1 |
44.75 |
| |
Pp1s351_36V6.1 |
34.05 |
| |
Pp1s223_30V6.1 |
34.35 |
|
AtGUX2 (At4g33330) |
AtGUX1 (At3g18660) |
39.60 |
| |
Pp1s21_381V6.1 |
42.93 |
| |
Pp1s351_36V6.1 |
34.23 |
| |
Pp1s223_30V6.1 |
33.05 |
|
AtIRX8 |
No homolog found |
|
| AtPARVUS | No obvious homolog found* |
Gene models were considered putative homologs if the Arabidopsis protein that was used for the Blast was the Arabidopsis protein which exhibited most similarity. *Although three Physcomitrella gene models were identified with the corresponding protein exhibiting between 49.57 and 51.57% similarity to PARVUS, the sequences all exhibited stronger homology to at least 10 other Arabidopsis proteins, and were therefore not considered as obvious homologs. (ClustalW).