Table 2.

Ten loci/genomic regions supported by multiple lines of evidence of being affected by directional selection during domestication/captive breeding in Atlantic salmon. Microsatellite markers are given in italics.

Pop.	Linkage group (d—dam, s—sire)	Chromosome	Markers	Map position cM	FDIST2  P < 0.01	BayeScan log10(BF) > 0.5	Clustering of loci		Annotationa
							F ST  P < 0.05	lnRH  P < 0.05	Top hit
	d11	3	13699_0319	0	X	X		X
			14711_157	0.5				X	Q5R5Y3∣B3GT2_PONPY Beta-13-galactosyltransferase 2 (Beta-13-GalTase 2) (Beta-3-Gal-T2)
	d19	8	15784_1161	7.9	X	X	X		Q61425∣HCDH_MOUSE Short chain 3-Hydroxyacyl-CoA dehydrogenase mitochondrial
IRL			BHMS365	24.9			X
	d14	21	BHMS311	1.5	X	X
	s13	19	16938_271	25.9	X			X	gnl∣CDD∣29599 cd01417 Ribosomal_L19e_E Ribosomal protein L19e eukaryotic. L19e
			16938_888	25.9				X	gnl∣CDD∣29599 cd01417 Ribosomal_L19e_E Ribosomal protein L19e eukaryotic. L19e
	d07	24	12320_396	46.3	X	X	X	X	sp∣P20135∣GSTT1_CHICK Glutathione S-Transferase theta-1 (GST-CL1) (GST class-theta)
			SSsp2216	46.3			X	X
	s22	17	12302_129	7			X	X	sp∣Q9JJL3∣SO1B2_MOUSE Solute carrier organic anion transporter family member 1B2
SWE			12302_196	7			X	X	sp∣Q9JJL3∣SO1B2_MOUSE Solute carrier organic anion transporter family member 1B2
	d33	28	14501_498	0	X
			16532_248	52.5			X	X	sp∣P63030∣BR44L_MOUSE Brain protein 44-like protein
			12035_0440	54			X	X	sp∣Q98967∣CYT_ONCKE Cystatin precursor
	d18	23	14186_163	25.7	X	X	X		sp∣Q96KP1∣EXOC2_HUMAN Exocyst complex component 2 (Exocyst complex component Sec5)
			Ssa85DU	36.4			X
CAN	d06	12	16937_940	57.4			X	X	sp∣P24844∣MLRN_HUMAN Myosin regulatory light chain 2 smooth muscle isoform (Myosin RLC)
			17580_1116	57.8			X	X	sp∣Q6NWF6∣K2C8_BRARE Keratin type II cytoskeletal 8 (Cytokeratin-8) (CK-8) (Keratin-8)
	d23	16	14053_0820	33.4	X	X

^aBLASTX search against CDD and Swissprot databases [28].