Table 3.
ITS1 variation among 76 isolates of Thalassiosira rotula collected from around the globe
|
Lineage |
Sequence ID |
n |
Origin |
Site # |
BP Position |
||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41 | 44 | 50 | 82 | 95 | 108 | 149 | 200 | 201 | |||||
| 1 |
1 |
17 |
Vancouver Island (A and B) |
2,3 |
A |
G |
C |
C |
C |
A |
- |
G |
G |
| 1 |
4 |
2 |
Vancouver Island (A and B) |
2,3 |
- |
- |
- |
- |
A/C |
A/T |
- |
- |
- |
| 1 |
5 |
2 |
Queen Charlotte Islands, La Jolla, CA |
1,5 |
- |
- |
- |
- |
- |
- |
C |
- |
- |
| 2 |
2 |
11 |
Puget Sound, Queen Charlotte Islands |
4,1 |
G/A |
- |
- |
- |
- |
- |
- |
- |
A |
| 2 |
6 |
4 |
Puget Sound |
4 |
G |
- |
- |
- |
- |
- |
- |
- |
G/A |
| 3 |
3 |
38 |
Martha’s Vineyard, Narragansett Bay, Japan, Mediterranean, Scotland |
6,7,8, 9,10,12 |
- |
- |
- |
T |
- |
- |
- |
T |
- |
| 3 | 7 | 2 | Mediterranean and Narragansett Bay | 11,8 | - | A | C/T | T | - | - | - | T | - |
This table includes only those sequences represented by >1 isolate. No singleton sequences are displayed. Base pairs indicated with a slash (eg. A/C) indicate ambiguous signals in sequencing, and thus the possible presence of two alleles at that position.