Table 2.
Putative expression of de-novo identified families of TEs. TE families are constituted by sequences with similarity ≥80% among all its members
| superfamily | total number of TE families | Number of families hitting at least one EST with a minimum coverage of 70% EST | proportion of TE families with putative expression |
|---|---|---|---|
|
Copia |
819 |
77 |
9.40 |
|
Gypsy |
263 |
20 |
7.60 |
|
L1 |
115 |
1 |
0.87 |
|
hAT |
68 |
7 |
10.29 |
|
Mutator |
60 |
0 |
0.00 |
|
En-Spm |
38 |
1 |
2.63 |
|
Helitron |
32 |
0 |
0.00 |
|
Harbinger |
15 |
0 |
0.00 |
| Tc1-Mariner | 7 | 0 | 0.00 |