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. 2013 Jan 14;8(1):e54401. doi: 10.1371/journal.pone.0054401

Table 1. Structural statistics for the S64 and S67 ensembles.

S64 S67
Physical Parameters (including nonnative N-terminal residue)
Number of residues 32 36
Average molecular weight (reduced, unlabeled, Da) 3565.98 4249.82
Monoisotopic molecular weight (reduced, unlabeled, Da) 3563.40 4246.85
Structural Restraints
NOE-derived distance restrains (ARIA cycle 8)
Intraresidue (|ij| = 0) 209 319
Sequential (|ij| = 1) 66 94
Short (2≤|ij|≤3) 9 20
Medium (4≤|ij|≤5) 11 23
Long (|ij|>5) 34 83
Ambiguous 84 137
Total 413 676
Dihedral constraints
Phi 24 25
Psi 24 25
Sγ-Sγ distance restraints 3 3
Hydrogen bond restraints 0 7
Statistics for accepted structures
Accepted structures 20 20
Mean CNS energy terms
E total (kcal mol–1 ± SD) −786 (±41) −714 (±47)
E van der Waals (kcal mol–1 ± SD) −100 (±49) −126 (±10)
E distance restraints (kcal mol–1 ± SD) 183 (±15) 294 (±21)
Restraint violations >0.3 Å (average # per structure) 5.6 (±1.7) 5.7 (±2.5)
RMS deviations from the ideal geometry used within CNS
Bond lengths (Å) 0.0040 0.0043
Bond angles (°) 0.55 0.64
Improper angles (°) 1.86 3.00
Ramachandran Statistics (PROCHECK 3.5.4 [37])
Most favored (%) 88.5 68.6
Additionally allowed (%) 10.8 25.9
Generously allowed (%) 0.42 1.07
Disallowed (%) 0.21 4.47
Average atomic RMS deviations from average structure (±SD)*
N, Cα, C, and O atoms (all residues, Å) 0.86 (±0.22) 0.87 (±0.33)
All heavy atoms (all residues, Å) 1.43 (±0.21) 1.33 (±0.16)
N, Cα, C, and O atoms (for residues with cop ≥0.9, Å) 0.57 (±0.17) 0.33 (±0.08)
All heavy atoms (for residues with cop ≥0.9, Å) 1.30 (±0.17) 1.04 (±0.14)
MolProbity analyses (v3.19 [38])
Clashscore 12 (±4) 18.7 (±5.4)
Clashscore percentile (%) 63 (±18) 39 (±19)
Clashscore Z-score 0.42 (±0.62) −0.25 (±0.48)
*

Two sets of atomic RMS deviations are provided. The first set is for the full peptide (residues 1–32 for S64, 1–36 for S67) whereas the second set is calculated only including residues for which the circular order parameters (cop) for both φ and ψ are ≥0.9 (residues 2 and 4–30 for S64, and residues 5–35 for S67).