Table 5. Identification of segregation distortion SSR loci distributed throughout the ‘Katy’ LG3, using data from subsets of the outcrossing populations ‘H×K’, ‘G×K’ and ‘C×K’ carrying the PPM.
Locus | PeachMba | Populationb | Seg.Typec | -c | -d | -e | -g | -n | -p | Total | ?2 (P-value)d |
MA066a | 02,40 | H×K−/G×K | <efxeg>/<nnxnp> | 5 | 6 | 11 | 14 | 36 | 0,44 (0,50) | ||
ssrPaCITA23 | 02,70 | H×K/G×K | <efxeg> | 16 | 20 | 36 | 0,44 (0,50) | ||||
UDAp468 | 04,85 | H×K/C×K | <efxeg> | 21 | 14 | 35 | 1,40 (0,24) | ||||
BPPCT039 | 05,80 | H×K/C×K | <abxcd>/<efxeg> | 3 | 8 | 13 | 9 | 33 | 2,46 (0,12) | ||
PGS3_03 | 16,41 | H×K/C×K | <efxeg> | 33 | 2 | 35 | 27,46 (1.6e−7)e | ||||
PGS3_12 | 17,38 | All three | <efxeg>/<nnxnp> | 23 | 1 | 34 | 2 | 60 | 48,60 (0,00)e | ||
PGS3_15 | 17,71 | C×K | <efxeg> | 24 | 0 | 24 | 24,00 (9.6e−7) | ||||
PGS3_22 | 18,49 | All three | <efxeg>/<nnxnp> | 36 | 0 | 24 | 0 | 60 | 60,00 (0,00)e | ||
PGS3_23 | 18,61 | All three | <efxeg>/<nnxnp> | 36 | 0 | 24 | 0 | 60 | 60,00 (0,00)e | ||
PGS3_28 | 19,14 | All three | <nnxnp> | 60 | 0 | 60 | 60,00 (0,00)e | ||||
PGS3_32 | 19,60 | All three | <efxeg>/<nnxnp> | 11 | 0 | 48 | 1 | 60 | 56,07 (0,00)e | ||
PGS3_33 | 19,66 | All three | <abxcd>/<efxeg> | 0 | 11 | 48 | 1 | 60 | 56,07 (0,00)e | ||
AMPA119 | 20,00 | All three | <efxeg> | 59 | 1 | 60 | 56,07 (0,00)e | ||||
EPPCU7190 | 19,78 | All three | <efxeg> | 59 | 1 | 60 | 56,07 (0,00)e | ||||
CPDCT027 | 21,67 | All three | <abxcd>/<nnxnp> | 31 | 3 | 19 | 5 | 58 | 30,41 (3e−8)e | ||
EPPCU0532 | 22,00 | H×K/G×K | <efxeg>/<nnxnp> | 11 | 0 | 21 | 3 | 35 | 24,03 (9.5e−7)e |
Marker position (Mb) within the peach genome scaffold_3 which size estimated by IPGI was 22.02 Mb.
S-genotypes of the selected seedlings were: S 1 S 1 and S 1 S 4 in ‘H×K’; S 2 S 2 and S C S 2 in ‘C×K’; S 1 S 1, S 1 S 2 and S 2 S 2 in ‘G×K’.
Segregation type as per JoinMap 3.0.
Chi-square test was performed for the expected ratios 1∶2:1 (<abxab>) (a) and 1∶1 (<nn×np>/<ef×eg>/<ab×cd>) (b).
Observed ratios differ significantly from expected at P<0.05 for 2 (a) or 1 degrees of freedom (b).