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. Author manuscript; available in PMC: 2014 Jan 4.
Published in final edited form as: Biochem Biophys Res Commun. 2012 Nov 10;430(1):313–319. doi: 10.1016/j.bbrc.2012.10.130

Table 1.

Predicted and experimental binding affinity for compounds identified using Autodock 4.2 to dock compounds into human PMK. NMR and fluorescence techniques were then used to experimentally verify binding, and determine dissociation constants (Kd values).

Chemical Predicted Lowest
Binding Energy
(kcal/mol)
Kd (µM)
NMR
[Residue used for
data fitting]
Kd (µM)
Fluorescence
graphic file with name nihms421896t1.jpg −11.6 55.4 ± 12.9
[G177]
31 ± 8
graphic file with name nihms421896t2.jpg −10.34 6.3 ± 5.7
[T128]
14.6 ± 4.6
graphic file with name nihms421896t3.jpg −11.8 NDa
[Q136]
12 ± 2
graphic file with name nihms421896t4.jpg −9.2 NDa
[A172]
61.0 ± 19.5
a

The NMR fit was not reliable because in addition to a specific binding event that seems to occur at low concentrations, there is also a non-specific effect that does not plateau.