Table 1.
|
Replicate 1 |
Replicate 2 |
||||||
---|---|---|---|---|---|---|---|---|
WT | WT_pH | snf1 | Snf1_pH | WT | WT_pH | snf1 | snfi_pH | |
Total reads | 25,609 | 43,559 | 37,296 | 43,308 | 28,322 | 47,040 | 40,230 | 47,327 |
Filtered duplicated reads | 4,350 | 7,106 | 6,065 | 6,774 | 3,003 | 5,146 | 4,035 | 4,442 |
Non-redundant reads | 21,259 | 36,453 | 31,231 | 36,534 | 25,319 | 41,894 | 36,195 | 42,885 |
Reads with good quality | 20,964 | 35,740 | 30,709 | 35,971 | 24,326 | 40,235 | 34,683 | 41,412 |
Number of reads with unique mapping on Ensembl transcripts | 7,768 | 12,450 | 11,911 | 13,980 | 9,119 | 13,961 | 14,152 | 16,188 |
Number of reads with unique mapping on transcripts as in (Nagalakshmi et al., 2008) | 17,525 | 29,152 | 25,693 | 29,004 | 20,391 | 32,505 | 29,111 | 33,592 |
Number of reads with no transcript mapping | 1,503 | 2,397 | 2,398 | 3,034 | 1,683 | 2,987 | 2,478 | 3,489 |
Number of reads with multiple mapping on transcripts | 860 | 1,476 | 1,146 | 1,524 | 942 | 1,597 | 1,354 | 1,580 |
Number of transcripts with reads | 3,564 | 4,172 | 4,384 | 4,770 | 3,862 | 4,344 | 4,552 | 4,955 |
Number of undetected transcritps | 3,560 | 2,952 | 2,740 | 2,354 | 3,262 | 2,780 | 2,572 | 2,169 |