Table 4.
Specifically up-regulated transcription factors
| RefSeq Accession | Closest Genoscope match | Affymetrix Probeset ID | Young berries | Early-veraison | Late-veraison | Ripe berries | Encoded protein annotation |
|---|---|---|---|---|---|---|---|
|
XM_002282012.2 |
GSVIVT00014253001 |
|
125.18 |
0.51 |
0.76 |
0.35 |
Ethylene-responsive Transcription factor 5 |
|
XM_002281930.1 |
GSVIVT00014247001 |
|
121.59 |
1.73 |
1.03 |
0.29 |
Ethylene-responsive Transcription factor 5 |
|
XM_002282133.2 |
GSVIVT00036589001 |
|
114.34 |
0.52 |
0.60 |
0.45 |
Ethylene-responsive Transcription factor ERF109 |
|
XM_002276536.2 |
GSVIVT00016398001 |
1608812_at |
105.10 |
0.15 |
0.27 |
0.13 |
Ethylene-responsive Transcription factor ERF017-like |
|
XM_002282279.1 |
GSVIVT00023866001 |
|
90.51 |
0.24 |
0.22 |
0.86 |
Ethylene-responsive Transcription factor 7-like |
|
XM_002281911.2 |
GSVIVT00014244001 |
|
83.05 |
0.51 |
0.47 |
0.14 |
Ethylene-responsive Transcription factor 5-like |
|
XM_002281777.2 |
GSVIVT00014237001 |
1613698_at |
80.37 |
1.36 |
0.50 |
0.28 |
Ethylene-responsive Transcription factor 5 |
|
XM_002281895.2 |
GSVIVT00014242001 |
1619600_at |
73.43 |
0.80 |
0.53 |
0.19 |
Ethylene-responsive Transcription factor 5 |
|
XM_002268377.2 |
GSVIVT00000349001 |
|
46.99 |
0.24 |
0.15 |
0.06 |
Ethylene-responsive Transcription factor WIN1-like |
|
XM_002281047.2 |
GSVIVT00022870001 |
1616185_at |
39.00 |
0.11 |
0.03 |
0.17 |
Transcription factor bHLH96-like |
|
XM_002282131.1 |
GSVIVT00014256001 |
|
38.48 |
0.44 |
0.23 |
0.13 |
Ethylene-responsive Transcription factor 5 |
|
XM_002280334.1 |
GSVIVT00032308001 |
|
36.98 |
0.00 |
0.00 |
0.05 |
Ethylene-responsive Transcription factor ERF017 |
|
XM_002281876.2 |
GSVIVT00014240001 |
|
31.92 |
0.20 |
0.40 |
0.10 |
Ethylene-responsive Transcription factor 5 |
|
XM_002281835.2 |
GSVIVT00014238001 |
1613799_at |
29.46 |
0.30 |
0.09 |
0.00 |
Ethylene-responsive Transcription factor 5 |
|
XM_002284201.1 |
GSVIVT00014754001 |
|
29.28 |
0.35 |
0.21 |
0.20 |
Transcriptional activator Myb |
|
XM_002263558.1 |
GSVIVT00006679001 |
|
22.72 |
0.12 |
0.00 |
0.03 |
Transcription factor RAX1 |
|
XM_002263958.2 |
GSVIVT00008628001 |
|
19.81 |
0.04 |
0.00 |
0.04 |
Ethylene-responsive Transcription factor ERF023 |
|
XM_002268533.2 |
GSVIVT00000129001 |
|
18.68 |
0.08 |
0.07 |
0.16 |
Transcription factor TCP15-like |
|
XM_002283709.1 |
GSVIVT00032414001 |
1609286_at |
18.29 |
0.13 |
0.05 |
0.11 |
GATA Transcription factor 9 |
|
XM_002274170.1 |
GSVIVT00034800001 |
|
11.10 |
0.04 |
0.00 |
0.03 |
Transcriptional activator Myb |
|
XM_002276513.1 |
GSVIVT00037009001 |
|
9.52 |
0.08 |
0.03 |
0.13 |
Transcription factor bHLH135 |
|
XM_003633976.1 |
GSVIVT00014248001 |
|
8.02 |
0.00 |
0.09 |
0.03 |
Ethylene-responsive Transcription factor 5-like |
|
XM_002283058.1 |
GSVIVT00020927001 |
1613614_at |
7.56 |
0.11 |
0.00 |
0.00 |
Transcription factor bHLH135 |
|
XM_002276926.1 |
GSVIVT00029219001 |
|
7.43 |
0.00 |
0.00 |
0.00 |
Transcription repressor MYB4 |
|
XM_002274226.2 |
GSVIVT00018597001 |
|
5.91 |
0.07 |
0.00 |
0.06 |
Transcription factor bHLH118-like |
|
XM_002284800.1 |
GSVIVT00014836001 |
|
5.31 |
0.07 |
0.04 |
0.04 |
Heat stress Transcription factor B-4 |
|
XM_003632349.1 |
GSVIVT00001240001 |
1621346_at; |
0.10 |
50.36 |
25.69 |
7.32 |
B3 domain-containing transcription factor ABI3-like |
|
XM_002275111.1 |
GSVIVT00025350001 |
|
0.14 |
30.00 |
15.82 |
4.91 |
Transcription factor HBP-1b(c1)-like |
|
XM_003632364.1 |
|
|
0.00 |
4.66 |
4.85 |
0.89 |
Transcription factor UPBEAT1-like |
|
XM_002283723.2 |
|
|
0.00 |
2.52 |
0.93 |
0.06 |
myb family transcription factor APL-like |
|
XM_002272753.2 |
GSVIVT00031144001 |
1609798_at |
30.57 |
50.29 |
34.79 |
155.93 |
Trihelix transcription factor GTL2-like |
|
XM_002276158.2 |
GSVIVT00017225001 |
1610832_at |
8.91 |
19.82 |
17.88 |
67.73 |
Probable WRKY transcription factor 32 |
|
XM_002281158.1 |
GSVIVT00028232001 |
|
5.78 |
13.73 |
18.95 |
61.77 |
Probable WRKY transcription factor 47-like |
|
XM_003635597.1 |
|
1611921_at |
7.36 |
16.93 |
13.95 |
59.56 |
GATA transcription factor 26-like |
|
XM_002269660.2 |
GSVIVT00025898001 |
|
1.14 |
9.70 |
11.70 |
57.63 |
WRKY transcription factor 6-like |
|
XM_002273307.2 |
GSVIVT00013494001 |
1620116_at |
9.62 |
13.68 |
10.78 |
44.93 |
GATA transcription factor 26 |
|
XM_002275540.1 |
GSVIVT00002773001 |
1607465_at |
1.34 |
2.26 |
3.46 |
43.23 |
Probable WRKY transcription factor 57 |
|
XM_002274248.2 |
GSVIVT00033300001 |
|
0.22 |
0.67 |
1.28 |
23.91 |
Ethylene-responsive transcription factor ERF003 |
|
XM_003631122.1 |
GSVIVT00030611001 |
1608728_at |
6.36 |
6.37 |
4.36 |
19.42 |
Heat stress transcription factor A-8-like |
|
XM_002267778.1 |
GSVIVT00006201001 |
1609629_at |
0.76 |
0.23 |
0.36 |
10.56 |
Ethylene-responsive transcription factor ERF113 |
|
XM_002283591.1 |
GSVIVT00024804001 |
|
0.10 |
0.88 |
1.21 |
9.53 |
Ethylene-responsive transcription factor RAP2-11 |
|
XM_002275357.2 |
GSVIVT00003416001 |
1622116_at |
0.59 |
0.46 |
0.10 |
4.36 |
Transcription factor bHLH144 isoform 2 |
|
XM_003632808.1 |
GSVIVT00034227001 |
|
0.14 |
0.88 |
0.45 |
4.20 |
Transcription factor bHLH87-like |
|
XM_002280888.1 |
|
1618136_at |
0.38 |
0.14 |
0.16 |
4.13 |
Ethylene-responsive transcription factor ERF114-like |
|
XM_002274180.2 |
GSVIVT00033298001 |
1609559_at |
0.00 |
0.05 |
0.19 |
3.98 |
Ethylene-responsive transcription factor ERF003 isoform 1 |
|
XM_002272053.1 |
GSVIVT00003403001 |
|
1.02 |
0.19 |
0.23 |
3.18 |
Probable WRKY transcription factor 28 |
|
XM_002279376.2 |
GSVIVT00030359001 |
1618408_at |
0.38 |
0.09 |
0.06 |
2.89 |
Transcription factor bHLH75 |
|
XM_002275834.2 |
GSVIVT00037958001 |
|
0.59 |
0.34 |
0.19 |
2.80 |
Ethylene-responsive transcription factor ERF113-like |
|
XM_002285559.1 |
GSVIVT00015050001 |
|
0.15 |
0.53 |
0.06 |
2.36 |
Transcription factor bHLH93 |
|
XM_002279450.1 |
GSVIVT00016545001 |
|
0.03 |
0.04 |
0.02 |
2.32 |
Putative transcription factor bHLH041 |
|
XM_002284180.2 |
GSVIVT00025614001 |
|
0.07 |
0.08 |
0.02 |
1.99 |
Heat stress transcription factor B-3-like |
|
XM_002264354.2 |
GSVIVT00007519001 |
|
0.17 |
0.00 |
0.00 |
1.36 |
Ethylene-responsive transcription factor ERF098-like |
|
XM_002270623.2 |
GSVIVT00029005001 |
|
0.02 |
0.04 |
0.02 |
1.34 |
Probable WRKY transcription factor 72 |
|
XM_002267757.2 |
GSVIVT00006494001 |
1607431_at |
0.00 |
0.12 |
0.00 |
1.04 |
Probable WRKY transcription factor 53-like |
|
XM_002279303.1 |
GSVIVT00020055001 |
|
0.00 |
0.00 |
0.00 |
0.96 |
Heat stress transcription factor A-6b |
|
XM_003633801.1 |
GSVIVT00020889001 |
|
0.00 |
0.19 |
0.17 |
0.96 |
AP2-like ethylene-responsive transcription factor AIL5-like |
|
XM_002279882.1 |
GSVIVT00032269001 |
|
0.00 |
0.05 |
0.00 |
0.71 |
Transcription factor WER |
|
XM_002277185.2 |
GSVIVT00020895001 |
|
0.05 |
0.02 |
0.02 |
0.68 |
Probable WRKY transcription factor 72 |
| XM_002274351.1 | GSVIVT00037881001 | 0.00 | 0.00 | 0.00 | 0.62 | Probable WRKY transcription factor 45 |
Transcriptions factors that are up-regulated 50-fold or greater in E-L 31 berries, and 3-fold or greater in E-L 35-36 berries or E-L 38 berries. The RPKM values indicating specific up-regulation are shown in bold. Expression values are shown in RPKM for each sample, and fold-changes were calculated relative to a minimum value of 0.1. Matching Genoscope and Probeset IDs are shown if applicable and the putative function of encoded proteins are described by their NCBI annotation. A complete list of all differentially regulated transcripts is presented in Additional file 2.