Figure 11.

Scatter plots for BIPACE for the wheat dataset with alignment false positives and true positives. Scatter plots for BIPACE for the wheat dataset with alignment false positives and true positives conditioned on retention time tolerance D (columns) and retention time threshold T (rows). Instances without retention time penalized similarity function are shown in the NA row/column for reference. It is visible that the unpenalized instances perform consistently worse on true positives, while they perform better with regard to the number of false positives.