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. Author manuscript; available in PMC: 2014 Jan 1.
Published in final edited form as: Biophys Chem. 2012 Nov 2;171:63–75. doi: 10.1016/j.bpc.2012.10.005

Table 4.

Summary of hydrogen exchange predictions derived from X-ray, homology modeling and NMR structures

protein method PDB code resolution Δlog kOH− correlation rmsdc
ubiquitin X-ray a 1.00 Å 0.92 0.79 ---
X-ray 1YIW 1.39 Å 1.03 0.61 0.66 Å
X-ray 1UBQ 1.80 Å 1.17 0.82 0.43 Å
homology 1BT0 1.70 Å 1.44 0.61 0.61 Å
NMR 1V80 1.52 0.12 1.10 Å
CI2 X-ray 1LW6 1.50 Å 0.83 0.83 ---
X-ray 2CI2 2.00 Å 1.04 0.77 0.46 Å
X-ray 2SNI 2.10 Å 0.84 0.83 0.38 Å
homology 1VBW 0.93 Å 1.38 0.76 1.15 Å
NMR 3CI2 2.55 0.42 1.55 Å
NMR b 1.22 0.70 1.10 Å
FKBP12 X-ray 2PPN 0.92 Å 0.82 0.85 ---
X-ray 1D6O 1.85 Å 1.07 0.82 0.32 Å
X-ray 1FKK 2.20 Å 1.14 0.85 0.40 Å
homology 1YAT 2.50 Å 1.18 0.74 0.84 Å
rubredoxin X-ray 1BQ8 1.10 Å 0.96 0.93 ---
X-ray 1VCX 1.50 Å 0.97 0.94 0.22 Å
X-ray 1CAA 1.80 Å 1.03 0.93 0.15 Å
homology 1IRN 1.20 Å 1.85 0.69 0.54 Å
a

cited [27,30] but unpublished.

b

RECOORD analysis [78].

c

rmsd for protein backbone with respect to the highest resolution X-ray structure.