Table 1.
Summarized profile of Pakistani AIV H5N1 isolates used in this study
|
S# |
Viruses nomenclature |
Summarized profile |
||||||
|---|---|---|---|---|---|---|---|---|
| Serotype | Date/Year of isolation | Place of isolation | Host specie | Clade | Pathogninicity | Genes sequenced | ||
| 1 |
A/Ck/Rawalakot/NARC2441/06 |
H5N1 |
28-02-2006 |
Rawalakot, AJK |
Chicken |
2.2.3 |
HPAI |
Whole Genome |
| 2 |
A/Ck/Sihala/NARC3303/06 |
H5N1 |
14-04-2006 |
Islamabad, ICT |
Breeder |
2.2.3 |
HPAI |
Whole Genome |
| 3 |
A/Ck/Lahore/NARC3320/06 |
H5N1 |
18-04-2006 |
Lahore, Punjab |
Broiler |
2.2.3 |
HPAI |
Whole Genome |
| 4 |
A/Gs/Lahore/NARC3321/06 |
H5N1 |
18-04-2006 |
Lahore, Punjab |
Goose |
2.2.3 |
HPAI |
HA and NA genes |
| 5 |
A/Pck/Mansehra/NARC-7558/07 |
H5N1 |
02-02-2007 |
Mansehra, KPK |
Peacock |
2.2.3 |
HPAI |
HA and NA genes |
| 6 |
A/Gs/Islamabad/NARC-7757/07 |
H5N1 |
11-02-2007 |
Islamabad, ICT |
Goose |
2.2.3 |
HPAI |
HA and NA genes |
| 7 |
A/Tk/Islamabad/NARC-7871/07 |
H5N1 |
13-02-2007 |
Islamabad, ICT |
Turkey |
2.2.3 |
HPAI |
HA and NA genes |
| 8 |
A/Tk/Islamabad/NARC-7873/07 |
H5N1 |
19-02-2007 |
Islamabad, ICT |
Turkey |
2.2.3 |
HPAI |
HA and NA genes |
| 9 |
A/Crow/Peshawar/NARC-7914/07 |
H5N1 |
22-02-2007 |
Peshawar, KPK |
Crow |
2.2.3 |
HPAI |
HA and NA genes |
| 10 |
A/Pck/Cahkshahzad/NARC-9238/07 |
H5N1 |
21-05-2007 |
Islamabad, ICT |
Peacock |
2.2.3 |
HPAI |
HA and NA genes |
| 11 |
A/Ck/Manshera/NARC-10337/07 |
H5N1 |
14-09-2007 |
Mansehra, KPK |
Broiler |
2.2.3 |
HPAI |
HA and NA genes |
| 12 |
A/Ck/Karachi/NARC-520/08 |
H5N1 |
08-01-2008 |
Karachi, Sindh |
Layer |
2.2.3 |
HPAI |
HA, NA &NS genes |
| 13 |
A/Ck/Lahore/NARC-610/08 |
H5N1 |
08-04-2008 |
Lahore, Punjab |
Layer |
2.2.3 |
HPAI |
HA, NA &NS genes |
| 14 |
A/Ck/Karachi/NARC-612/08 |
H5N1 |
15-04-2008 |
Karachi, Sindh |
Layer |
2.2.3 |
HPAI |
HA, NA &NS genes |
| 15 | A/Crow/Karachi/NARC-11672/08 | H5N1 | 12-02-2008 | Karachi, Sindh | Crow | 2.2.3 | HPAI | HA, NA &NS genes |
ICT: Islamabad Capital Territory, KPK: Khyber Pakhtoon Khawa, AJK: Azad Jammu & Kashmir, Pak: Pakistan, NARC: National Agricultural Research Center, CK: Chicken, Gs: Goose, Pck: Peacock, Tk: Turkey.