Table 2.
GenBank accession numbers and abbreviations of Pakistani AIV H5N1 isolates used in this study
| Name of isolates | Abbreviations used | HA | NA | M | NP | PA | NS | PB1 | PB2 |
|---|---|---|---|---|---|---|---|---|---|
| A/Chicken/Rawalakot/NARC-2441A/06 |
Ck/Rlkt/2441/06 |
CY037762 |
CY037764 |
CY037765 |
CY037763 |
CY037761 |
CY037766 |
CY037760 |
CY037759 |
| A/Chicken/Sihala/NARC-3303/06 |
Ck/Shla/3303/06 |
CY037770 |
CY037772 |
CY037773 |
CY037771 |
CY037769 |
CY037774 |
CY037768 |
CY037767 |
| A/Chicken/Lahore/NARC-3320/06 |
Ck/Lhr/3320/06 |
HM208702 |
HM208704 |
HM208703 |
HM208705 |
HM208707 |
HM208706 |
HM208708 |
HM208709 |
| A/Goose/Lahore-Pakistan/NARC-3321/06 |
Gs/Lhr/3321/06 |
CY034733 |
CY034734 |
- |
- |
- |
- |
- |
- |
| A/Peacockk/Manshera-Pak/NARC-7558/07 |
Pck/Mnsr/7558/07 |
EU401796 |
EU401799 |
- |
- |
- |
- |
- |
- |
| A/Goose/Islamabad/NARC-7757/07 |
Gs/Isb/7757/07 |
CY034725 |
CY034726 |
- |
- |
- |
- |
- |
- |
| A/Turkey/Islamabad-Pak/NARC-7871/07 |
Tk/Isb/7871/07 |
EU401794 |
EU401797 |
- |
- |
- |
- |
- |
- |
| A/Turkey/Islamabad/NARC-7873/07 |
Tk/Isb/7873/07 |
CY034727 |
CY034728 |
- |
- |
- |
- |
- |
- |
| A/Crow/Peshawar/NARC-7914/07 |
Crow/Psh/7914/07 |
CY034729 |
CY034730 |
- |
- |
- |
- |
- |
- |
| A/Peacock/Cahkshahzad/NARC-9238/07 |
Pck/Cksz/9238/07 |
CY034731 |
CY034732 |
- |
- |
- |
- |
- |
- |
| A/Chicken/Manshera/NARC-10337/07 |
Ck/Mnsr/10337/07 |
EU401795 |
EU401798 |
- |
- |
- |
- |
- |
- |
| A/Chicken/Pakistan-Khi/NARC-520/2008 |
Ck/Khi/520/08 |
JF827075 |
JF827076 |
- |
- |
- |
JF827077 |
- |
- |
| A/Chicken/Pakistan-Lhr/NARC-610/2008 |
Ck/Lhr/610/08 |
JF827078 |
JF827079 |
- |
- |
- |
JF827080 |
- |
- |
| A/Chicken/Pakistan-Khi/NARC-612/2008 |
Ck/Khi/612/08 |
JF827081 |
JF827082 |
- |
- |
- |
JF827083 |
- |
- |
| A/Crow/Pakistan-Khi/NARC-11672/2008 | Crow/Khi/11672/08 | JF827084 | JF827085 | - | - | - | JF827086 | - | - |
Not done/Data not available.