Table 3.
Comparison of antigenically important amino acids in HA genes of Pakistani AIV H5N1 with initially isolated strain during 2006
| Virus names | 39 E | 141 S | 153 K | 155 D | 156 A | 162 R | 181 P | 185 A | 189 R |
217 S |
226 M |
252 N |
289 M |
307 K |
376 D |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Ck/Rawalakot/2441/06 |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
| Ck/Sihala/3303/06 |
G |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
| Ck/Laore/3320/06 |
G |
- |
- |
- |
T |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
| Gs/Lahore/3321/06 |
G |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
| Pck/Mansehra/7558/07 |
G |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
N |
| Gs/Islamabd/7757/07 |
G |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
K |
R |
- |
| Tk/Islamabad/7871/07 |
G |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
K |
R |
- |
| Tk/Islamabad/7873/07 |
G |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
K |
- |
N |
| Crow/Peshawar/7914/07 |
G |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
N |
| Pck/Chakshahzad/9238/07 |
G |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
N |
| Ck/Mansehra/10337/07 |
G |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
- |
| Ck/Karachi/520/08 |
G |
- |
- |
- |
- |
- |
- |
- |
- |
P |
- |
- |
- |
- |
- |
| Ck/Lahore/610/08 |
G |
P |
- |
- |
T |
I |
S |
- |
- |
- |
- |
Y |
- |
- |
- |
| Ck/Karachi/612/08 |
G |
P |
- |
G |
T |
- |
S |
T |
K |
- |
I |
Y |
- |
- |
- |
| Crow/Karachi/11672/08 | G | - | R | - | S | - | - | - | - | - | - | - | - | - | - |
Ck: Chicken, Gs: Goose, Ty: Turkey, Cw: Crow, Pk: Peacock, Pak: Pakistan.
- Not done/Data not available.