Table 1.
Description of the S-Locus Flanking Genes Studied with Their Genomic Position (in kb) in the Arabidopsis lyrata Reference Genome Indicated Relative to the Start Codon of B80 and ARK3.
| Gene | Distance in kb from |
nA. halleri | nA. lyrata | bpall | bpsyn | Gene Product | Source |
||
|---|---|---|---|---|---|---|---|---|---|
| B80 | ARK3 | A. halleri | A. lyrata | ||||||
| At4g21170 | 73.24 | — | 60 | 34 | 539 | 136 | Pentatricopeptide (PPR) repeat-containing protein | This study | This study |
| At4g21200 | 57.3 | — | 62 | 40 | 354 | 76 | ATGA2OX8; gibberellin 2-beta-dioxygenase | This study | This study |
| At4g21230 | 38.48 | — | 60 | 40 | 473 | 112 | Protein kinase family protein | This study | This study |
| At4g21323 | 15.09 | — | 54 | 37 | 484 | 120 | Subtilase family protein | This study | This study |
| B80 | — | — | 58 | 45 | 666 | 173 | Binding/ubiquitin-protein ligase | Ruggiero et al. (2008) | Kamau et al. (2007) |
| ARK3 | — | — | 43 | 42 | 292 | 67 | Arabidopsis receptor kinase 3 | Ruggiero et al. (2008) | Hagenblad et al. (2006) |
| B120 | — | 4.24 | 57 | 44 | 520 | 115 | Protein kinase/sugar binding | Ruggiero et al. (2008) | Kamau et al. (2007) |
| B160 | — | 28.04 | 47 | 12 | 761 | 155 | Transcription factor | Ruggiero et al. (2008) | Kamau and Charlesworth (2005) |
| At4g21440 | — | 42.03 | 46 | 26 | 479 | 115 | ATM4/ATMYB102; DNA binding/transcription factor | This study | This study |
| At4g21480 | — | 59.43 | 60 | 38 | 548 | 132 | Glucose transporter | This study | This study |
| At4g21550 | — | 110.11 | 56 | 36 | 430 | 97 | Transcriptional factor B3 family protein | This study | This study |
| At4g21620 | — | 156.29 | 48 | 38 | 260 | 68 | Glycine-rich protein | This study | This study |
Note.—nA. halleri and nA. lyrata are the number of haplotypes sequenced in A. halleri and A. lyrata, respectively. bpall is the total length of the sequenced fragments. bpsyn is the number of retained synonymous positions.