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. 2012 Nov 5;13:288. doi: 10.1186/1471-2105-13-288

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Copyright ©2012 Prieto et al.; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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HTML output. Example of the protein details section of the HTML output. This conclusive protein has one unique peptide and two non-discriminating peptides. The unique peptide has been detected in 3 out of the 5 replicates (run numbers 2, 3 and 4). In peptides number 459 and 1567 no PTMs have been detected while in peptide number 2621 two peptide variants (different PTMs) have been identified. A number is used for unique peptides, a “*” is appended to discriminating peptides, and a “**” to non-discriminating peptides.