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. 2012 Aug 11;9:159. doi: 10.1186/1743-422X-9-159

Table 1.

Predicted targets of modulated miRNAs upon RABV infection involved in immune response pathways

miRNA KEGG pathway Target genes Number of targets Pvalue
mmu-miR-377
mmu04630: Jak-STAT signaling pathway
CSF2RB2, EP300, JAK2, SOCS4, BCL2L
5
0.01
mmu-miR-377
mmu04010: MAPK signaling pathway
CACNA2D1, FASL, PPM1A, PPP3R1, RASA1, FLNC, PLA2G4A, SRF
8
0.02
mmu-miR-377
mmu04060: Cytokine-cytokine receptor interaction
CSF2RB2, FASL, ACVR2A, VEGFA, IL18RAP, KITL, PDGFRA, LTB
8
0.001
mmu-miR-377
mmu04666: Fc gamma R-mediated phagocytosis
WASF1, LIMK1, PRKCD, PLA2G4A, RPS6KB1
5
0.01
mmu-miR-377
mmu04520: Adherens junction
WASF1, EP300, YES1, PVRL4, PTPRB, SMAD4
6
1.18E-06
mmu-miR-377
mmu04310: Wnt signaling pathway
EP300, WNT5A, PPP3R1, FZD3, FZD4, AXIN1, BTRC, SMAD4, CUL1, DKK1
10
3.62E-04
mmu-miR-377
mmu04360: Axon guidance
PPP3R1, RASA1, LIMK1, SEMA6A, SEMA3D
5
0.001
mmu-miR-377
mmu04110: Cell cycle
EP300, ESPL1, CDC26, CUL1
4
0.007
mmu-miR-377
mmu04350: TGF-beta signaling pathway
EP300, ACVR2A, THBS1, PITX2, SMAD4, CUL1, LEFTY2, RPS6KB1
8
6.96E-06
mmu-miR-377
mmu04510: Focal adhesion
MYLK2, XIAP, ITGA6, VEGFA, THBS1, PDGFRA, FLNC, LAMC1
8
0.018
mmu-miR-691
mmu04630: Jak-STAT signaling pathway
GHR, SPRY2, TYK2, SPRED2, IL12A, CLCF1
6
0.01
mmu-miR-691
mmu04010: MAPK signaling pathway
PLA2G10, MKNK2, MAPKAPK3, CACNB2, TGFBR2, DUSP9
5
0.02
mmu-miR-691
mmu04060: Cytokine-cytokine receptor interaction
GHR, ACVR2A, BMP2, IL25, AMHR2, IL12A, TGFBR2, TNFSF14, CLCF1
9
0.001
mmu-miR-691
mmu04666:Fc gamma R-mediated phagocytosis
LYN, INPP5D
2
0.01
mmu-miR-691
mmu04520: Adherens junction
CSNK2B, SRC, CDH1, TGFBR2
4
1.18E-06
mmu-miR-691
mmu04310: Wnt signaling pathway
DKK2, CSNK2B, CAMK2G, CTBP2, VANGL1
5
3.62E-04
mmu-miR-691
mmu04360: Axon guidance
PTK2, SEMA6D, ABLIM1, NRP1, PLXNA2, SRGAP3, SEMA5A
7
0.001
mmu-miR-691
mmu04110: Cell cycle
YWHAB, TFDP1
2
0.007
mmu-miR-691
mmu04350: TGF-beta signaling pathway
ACVR2A, BMP2, THBS1, AMHR2, TFDP1, SP1, TGFBR2
7
6.96E-06
mmu-miR-691
mmu04510: Focal adhesion
PTK2, IBSP, ITGA10, PGF, CAPN2, THBS1, SRC
7
0.018
mmu-miR-1935
mmu04630: Jak-STAT signaling pathway
LIFR, SPRY3
2
0.01
mmu-miR-1935
mmu04010: MAPK signaling pathway
MAP3K12, FLNC, MAPT
3
0.02
mmu-miR-1935
mmu04060: Cytokine-cytokine receptor interaction
ACVR1, HGF, LIFR, CCR10
4
0.001
mmu-miR-1935
mmu04666: Fc gamma R-mediated phagocytosis
MARCKS
1
0.01
mmu-miR-1935
mmu04520: Adherens junction
YES1, PVRL1
2
1.18E-06
mmu-miR-1935
mmu04310: Wnt signaling pathway
NFAT5
1
3.62E-04
mmu-miR-1935
mmu04360: Axon guidance
NFAT5, PLXNA4, SRGAP2, DCC
4
0.001
mmu-miR-1935
mmu04110: Cell cycle
STAG1, CDKN1C
2
0.007
mmu-miR-1935
mmu04510: Focal adhesion
FLNC
1
0.018
mmu-miR-190
mmu04630: Jak-STAT signaling pathway
IL6
1
0.01
mmu-miR-190
mmu04010: MAPK signaling pathway
FASL, PLA2G6, BDNF, FGF14
4
0.02
mmu-miR-190
mmu04060: Cytokine-cytokine receptor interaction
FASL, HGF, IL6, CXCL16
4
0.001
mmu-miR-190
mmu04666: Fc gamma R-mediated phagocytosis
PLA2G6, ARPC5
2
0.01
mmu-miR-190
mmu04520: Adherens junction
SMAD2, TJP1
2
1.18E-06
mmu-miR-190
mmu04310: Wnt signaling pathway
SMAD2, PPP2R1B, ROCK1, PLCB1
4
3.62E-04
mmu-miR-190
mmu04360: Axon guidance
EPHA1, ROCK1
2
0.001
mmu-miR-190
mmu04110: Cell cycle
SMAD2, CHEK1, RBL1
3
0.007
mmu-miR-190
mmu04350: TGF-beta signaling pathway
SMAD2, PPP2R1B, PITX2, ROCK1, RBL1
5
6.96E-06
mmu-miR-190
mmu04510: Focal adhesion
CAPN2, HGF, ROCK1
3
0.018
mmu-miR-135a*
mmu04630: Jak-STAT signaling pathway
EP300,IL24,IFNAR2,IL12RB1,IFNG
5
0.01
mmu-miR-135a*
mmu04060: Cytokine-cytokine receptor interaction
IL24,IFNAR2,IL12RB1,IFNG,CXCL16,CD40LG
6
0.001
mmu-miR-135a*
mmu04666: Fc gamma R-mediated phagocytosis
NCF1
1
0.01
mmu-miR-135a*
mmu04520: Adherens junction
EP300, ACTN2
2
1.18E-06
mmu-miR-135a*
mmu04310: Wnt signaling pathway
EP300, WNT1, PPP2R1A
3
3.62E-04
mmu-miR-135a*
mmu04110: Cell cycle
EP300, YWHAQ, ANAPC7
3
0.007
mmu-miR-135a*
mmu04350: TGF-beta signaling pathway
EP300, BMP4, IFNG, PPP2R1A
4
6.96E-06
mmu-miR-135a*
mmu04510: Focal adhesion
PTEN, ITGA8, ACTN2
3
0.018
mmu-miR-290-5p
mmu04630: Jak-STAT signaling pathway
IL13RA1, IFNGR2, AKT1, CSF2RB
4
0.01
mmu-miR-290-5p
mmu04010: MAPK signaling pathway
GADD45A, MAPKAPK3, MEF2C, MAP3K1, AKT1FGF23
5
0.02
mmu-miR-290-5p
mmu04060: Cytokine-cytokine receptor interaction
IL13RA1, IL18R1, CD40, IFNGR2, CXCL12, ACVR1B, CSF2RB
7
0.001
mmu-miR-290-5p
mmu04666: Fc gamma R-mediated phagocytosis
MARCKS, AKT1
2
0.01
mmu-miR-290-5p
mmu04520: Adherens junction
LMO7, ERBB2, PTPRB, LEF1, INSR, SSX2IP, PVRL3
7
1.18E-06
mmu-miR-290-5p
mmu04310: Wnt signaling pathway
LEF1, CAMK2G, PLCB1, AXIN2
4
3.62E-04
mmu-miR-290-5p
mmu04360: Axon guidance
ROBO1, L1CAM, SEMA5B, CXCL12
4
0.001
mmu-miR-290-5p
mmu04110: Cell cycle
SMC3, MCM5, GADD45A, CDC25A, TFDP1, HDAC2, RAD21, ORC5L
8
0.007
mmu-miR-290-5p
mmu04350: TGF-beta signaling pathway
TFDP1
1
6.96E-06
mmu-miR-290-5p
mmu04510: Focal adhesion
XIAP, ERBB2, AKT1
3
0.018
mmu-miR-203
mmu04630: Jak-STAT signaling pathway
IL24, CNTFR, IL22RA2, CCND1, SOCS3, AKT2, IL12B
7
0.01
mmu-miR-203
mmu04010: MAPK signaling pathway
CACNA2D1, MAP3K13, DUSP5, MAP4K3, STK3, NLK, AKT2, ATF2, PDGFRA, RAP1A, MAPT, MAP3K1, PPM1B, FGF7, CRK, PRKCA
16
0.02
mmu-miR-203
mmu04060: Cytokine-cytokine receptor interaction
MET, IL24, CNTFR, ACVR2A, IL22RA2, VEGFA, XCL1, PDGFRA, IL12B
9
0.001
mmu-miR-203
mmu04666: Fc gamma R-mediated phagocytosis
PLD2, AKT2, DNM1L, PPAP2B, CRK, VAV3, PRKCA
7
0.01
mmu-miR-203
mmu04520: Adherens junction
MET, NLK, SRC, PTPRB, SNAI2
5
1.18E-06
mmu-miR-203
mmu04310: Wnt signaling pathway
SFRP2, CCND1, NLK, APC, CSNK1A1, CUL1, PRKCA
7
3.62E-04
mmu-miR-203
mmu04360: Axon guidance
MET, ABL1, SEMA3A, SEMA6A, SEMA5A
5
0.001
mmu-miR-203
mmu04110: Cell cycle
YWHAQ, CCND1, ABL1, SKP2, CUL1
5
0.007
mmu-miR-203
mmu04350: TGF-beta signaling pathway
ACVR2A, ID2, BMP5, CUL1, ID4
5
6.96E-06
mmu-miR-203
mmu04510: Focal adhesion
MET, PXN, CCND1, VEGFA, PPP1C, SRC, PDGFRA, RAP1A, RAPGEF1, TNC, COL4A4, CAV1, CRK, VAV3, PRKCA
15
0.018
mmu-miR-145
mmu04630: Jak-STAT signaling pathway
MYC, STAM, STAT4, SOCS7
4
0.01
mmu-miR-145
mmu04010: MAPK signaling pathway
MAP3K3, HSPA1L, PPP3CA, DUSP4, MYC, RASA2, RAPGEF2, FLNB, DUSP6, TGFBR2, MAP4K4, CRKL
12
0.02
mmu-miR-145
mmu04060: Cytokine-cytokine receptor interaction
FLT3L, TNFRSF11B, IL17RB, INHBB, ACVR1B, TGFBR2
6
0.001
mmu-miR-145
mmu04666:Fc gamma R-mediated phagocytosis
ARF6, CFL2, LAT, ARPC5, CRKL
5
0.01
mmu-miR-145
mmu04520: Adherens junction
YES1, ERBB2, CTNND1, ACTG1, SMAD3, ACTB, TGFBR2
7
1.18E-06
mmu-miR-145
mmu04310: Wnt signaling pathway
PPP3CA, FZD9, MYC, CTNNBIP1, SMAD3, SENP2, WNT5B
7
3.62E-04
mmu-miR-145
mmu04360: Axon guidance
PPP3CA, CFL2, SRGAP1, DPYSL2, SEMA3, EFNB3, SRGAP2, ABLIM2, SEMA6A, PLXNA2, SEMA3D
11
0.001
mmu-miR-145
mmu04110: Cell cycle
MCM5, MYC, SMAD3, CDK6, SFN, ORC2L
6
0.007
mmu-miR-145
mmu04350: TGF-beta signaling pathway
MYC, SMAD3, INHBB, TGFBR2, SMAD5
5
6.96E-06
mmu-miR-145 mmu04510: Focal adhesion ERBB2, ACTG1, FLNB, ACTB 4 0.018
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