Table 1.
k | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 |
---|---|---|---|---|---|---|---|---|---|
d2 |
7 |
5 |
5 |
5 |
5 |
5 |
6 |
6 |
5 |
d2S|M0 |
5 |
3 |
3 |
2 |
4 |
4 |
4 |
4 |
6 |
d2S|M1 |
9 |
4 |
3 |
4 |
4 |
4 |
4 |
5 |
7 |
d2S|M2 |
NA |
4 |
3 |
5 |
4 |
4 |
4 |
4 |
6 |
d2S|M3 |
NA |
NA |
3 |
4 |
4 |
5 |
4 |
4 |
7 |
d2*|M0 |
7 |
7 |
6 |
4 |
5 |
4 |
4 |
6 |
7 |
d2*|M1 |
8 |
5 |
4 |
4 |
5 |
5 |
5 |
6 |
7 |
d2*|M2 |
NA |
4 |
5 |
5 |
5 |
5 |
6 |
6 |
7 |
d2*|M3 |
NA |
NA |
4 |
4 |
5 |
5 |
5 |
5 |
6 |
Ma |
7 |
5 |
5 |
5 |
5 |
5 |
5 |
4 |
6 |
Eu |
7 |
5 |
5 |
5 |
5 |
5 |
5 |
7 |
5 |
Ch |
7 |
6 |
5 |
5 |
5 |
4 |
5 |
6 |
7 |
Hao |
NA |
5 |
4 |
4 |
6 |
6 |
8 |
9 |
11 |
Willner | 11 | 10 | 8 |
The “Mi” indicates that the expected counts are calculated based on i-th order Markov model for the background sequences. Monte Carlo p-values were estimated by comparing observed parsimony score to the scores in 1000 randomly-joined trees: parsimony score = 2--7, p < 0.001; score = 8, p = 0.002. Boldfaced are the two lowest parsimony scores.