Table 3.
SNP genotyping and diversity results
| Bear River | Bonneville | Coastal | Colorado River | Greenback | Lahontan Basin | Rio Grande | Westslope | Yellowstone | Rainbow | |
|---|---|---|---|---|---|---|---|---|---|---|
| Sample size |
10 |
10 |
10 |
10 |
10 |
10 |
10 |
10 |
10 |
5 |
| Polymorphic SNPs |
67 |
55 |
41 |
65 |
75 |
45 |
57 |
20 |
40 |
19 |
| MAF range |
0.05 – 0.50 |
0.05 – 0.50 |
0.05 – 0.50 |
0.05 – 0.50 |
0.05 – 0.50 |
0.05 – 0.50 |
0.05 – 0.50 |
0.05 – 0.50 |
0.05 – 0.50 |
0.10 – 0.50 |
| Average MAF |
0.125 |
0.080 |
0.074 |
0.130 |
0.116 |
0.071 |
0.099 |
0.045 |
0.091 |
0.048 |
| Highly polymorphic SNPs | 22 | 11 | 11 | 20 | 17 | 11 | 14 | 7 | 19 | 10 |
Summary of the results from the single nucleotide polymorphism (SNP) genotyping and diversity analysis Listed are sample size, total number of polymorphic SNP loci, range of minor-allele frequencies (MAF), average MAF, and total highly polymorphic SNP loci.