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. 2013 Jan 21;14(Suppl 1):S13. doi: 10.1186/1471-2164-14-S1-S13

Figure 4.

Figure 4

An example of Adjacency Filtering. The insight behind adjacency filtering: For a perfect mapping, all adjacent k-mers within a read should also be at adjacent locations within the reference. This is equivalent to searching for adjacent locations in adjacent k-mers' location lists.